View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10960_high_3 (Length: 517)
Name: NF10960_high_3
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 5159572 - 5159249
Alignment:
| Q |
18 |
aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn-gagagtacatagttagagat |
116 |
Q |
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| T |
5159572 |
aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagat |
5159473 |
T |
|
| Q |
117 |
ataattttcaataaataaatctgtaagaactattccccnnnnnnn-tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcata |
215 |
Q |
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| T |
5159472 |
ataattt-caataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcata |
5159374 |
T |
|
| Q |
216 |
tgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |
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| T |
5159373 |
tgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggc |
5159274 |
T |
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| Q |
316 |
atactatcgcgtcaaagaggaaatg |
340 |
Q |
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| T |
5159273 |
aacctatcgcgtcaaagagaaaatg |
5159249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 341
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
| Q |
209 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
308 |
Q |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
|
| Q |
309 |
agtcggcatactatcgcgtcaaagaggaaatgg |
341 |
Q |
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| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 5195205 - 5195065
Alignment:
| Q |
18 |
aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag----nnnnnnnngagagtacatagttaga |
113 |
Q |
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||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5195205 |
aattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttaga |
5195106 |
T |
|
| Q |
114 |
gatataattttcaataaataaatctgtaagaactattcccc |
154 |
Q |
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| T |
5195105 |
gatataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 5181807 - 5181710
Alignment:
| Q |
18 |
aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga |
115 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5181807 |
aattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 5172558 - 5172489
Alignment:
| Q |
18 |
aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca |
87 |
Q |
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| T |
5172558 |
aattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaacatctgca |
5172489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 4843064 - 4843133
Alignment:
| Q |
18 |
aattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca |
87 |
Q |
| |
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| T |
4843064 |
aattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaacatctgca |
4843133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
290 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
341 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
279 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
340 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 5212781 - 5212716
Alignment:
| Q |
21 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc |
86 |
Q |
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|||||||||||||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
5212781 |
tgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
240 |
caaattcttggagaatcctagatgacaaattggtat |
275 |
Q |
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| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
98 |
agagtacatagttagagatataattttcaataaat |
132 |
Q |
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| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 380
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
342 |
aaagagtattatgtggagagtgacaaaacatattttttc |
380 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| |
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| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
342 |
aaagagtattatgtggagagtgacaaaacatattt |
376 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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