View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10960_high_4 (Length: 471)
Name: NF10960_high_4
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 96 - 459
Target Start/End: Original strand, 28403707 - 28404070
Alignment:
| Q |
96 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403707 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
28403806 |
T |
|
| Q |
196 |
agactcaaaaagtgaaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
295 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403807 |
agactcaaaaagtgcaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
28403906 |
T |
|
| Q |
296 |
tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacaca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403907 |
tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacaca |
28404006 |
T |
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| Q |
396 |
ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagataggtgattctgtgct |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404007 |
ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagataggtgattctgtgct |
28404070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 96 - 459
Target Start/End: Complemental strand, 28586089 - 28585726
Alignment:
| Q |
96 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586089 |
catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc |
28585990 |
T |
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| Q |
196 |
agactcaaaaagtgaaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
295 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585989 |
agactcaaaaagtgcaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt |
28585890 |
T |
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| Q |
296 |
tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacaca |
395 |
Q |
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| T |
28585889 |
tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacaca |
28585790 |
T |
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| Q |
396 |
ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagataggtgattctgtgct |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585789 |
ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagataggtgattctgtgct |
28585726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 232 - 388
Target Start/End: Original strand, 28417400 - 28417556
Alignment:
| Q |
232 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaagagca |
331 |
Q |
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|||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||| ||| |
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| T |
28417400 |
gaggaagcctcggattgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagct |
28417499 |
T |
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| Q |
332 |
gttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttc |
388 |
Q |
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||||| ||| ||||| |||| |||||||||| | ||||||||||||||||| ||||| |
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| T |
28417500 |
gttgtcacaaaaacagctttacaatttcttgctaatgagaaagcagaatcaatgttc |
28417556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 28419851 - 28419944
Alignment:
| Q |
232 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
325 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||| ||| || ||||||| ||||||||||||||| |
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| T |
28419851 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28419944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 28582339 - 28582246
Alignment:
| Q |
232 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
325 |
Q |
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| T |
28582339 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28582246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 28403602 - 28403685
Alignment:
| Q |
18 |
aattacagttttttatctgaaccagt-gt-tatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg |
99 |
Q |
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||||||||||||| |||||||||| | || ||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||| |
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| T |
28403602 |
aattacagtttttgatctgaaccatttgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg |
28403685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 28586194 - 28586111
Alignment:
| Q |
18 |
aattacagttttttatctgaaccagt-gt-tatattaaagaacttgtgacagttgattttgacatatgttgcattgtattcatg |
99 |
Q |
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||||||||||||| |||||||||| | || ||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||| |
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| T |
28586194 |
aattacagtttttgatctgaaccatttgtgtatattaaagaacttgtgatggttggttttgtcatatgttgtattgcattcatg |
28586111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 8047415 - 8047370
Alignment:
| Q |
127 |
gagctacgtatgatataagaactaggattaaagacat-tgttaaaa |
171 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
8047415 |
gagctacatatgatataagaactaggattaaagacatatgttaaaa |
8047370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 28417270 - 28417363
Alignment:
| Q |
127 |
gagctacgtatgatataagaactaggattaaagacattgttaaaa---tatcttggtgatgatggctaactcagactcaaaaagtgaaattgga |
217 |
Q |
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||||| ||| ||||||||||| | |||| ||| ||||||||||| ||| |||| ||||||||||||||||||||| | ||||| ||||||| |
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| T |
28417270 |
gagctgcgtgtgatataagaatcaagattgaaggcattgttaaaaaaatatattggcgatgatggctaactcagactctacaagtgcaattgga |
28417363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 28417572 - 28417618
Alignment:
| Q |
413 |
gacgattctgagtggaaaaattggaaaaagataggtgattctgtgct |
459 |
Q |
| |
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|||||| ||| ||||||||| ||||||||||||||||||||||||| |
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| T |
28417572 |
gacgatcatgactggaaaaataggaaaaagataggtgattctgtgct |
28417618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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