View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10960_high_6 (Length: 405)
Name: NF10960_high_6
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_high_6 |
 | |
|
| [»] chr4 (14 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 5564731 - 5565120
Alignment:
| Q |
16 |
aagatgaatctcttgtatcgacagcagcgaaaaaaggtctgtaggaattctgccatcgatagaattataacttaagtcaatgatttcaagattctccagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5564731 |
aagatgaatctcttgtatcgacagcagcgaaaaaaggtctgtaggaattctgccatcgatagaattataacttaagtcaatgatttcaagattctccagt |
5564830 |
T |
|
| Q |
116 |
ccttcaaagttagaagataatggaatttcgccacttaaactattatctgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcattggac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5564831 |
ccttcaaagttagaagataatggaatttcgccacttaaactattatctgaaaggtctaggtggataaggtttttgaccatgccaaatggtggcattggac |
5564930 |
T |
|
| Q |
216 |
ctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5564931 |
ctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaa |
5565030 |
T |
|
| Q |
316 |
tttagataagtgcctcaatttgccaatagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5565031 |
tttagataagtgcctcaatttgccaatagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcact |
5565120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 163 - 405
Target Start/End: Original strand, 5605195 - 5605437
Alignment:
| Q |
163 |
tgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcattggacctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgagg |
262 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
5605195 |
tgaaaggtctaggaagataaggtttttgaccatgccaaatggtggcattggacctgtgaaattattatttgacaaatccaagtccctgagttgtgtgagg |
5605294 |
T |
|
| Q |
263 |
tttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgccaatagagctaggtaatgctccag |
362 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5605295 |
tttgacaatgaattggaaagtgttccattaaattgacaactggaaagatacaattcagataagtgcctcaagttgccaatagagctaggtaatgctccag |
5605394 |
T |
|
| Q |
363 |
agaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
||||| |||||| |||| | |||||||| |||||||||||||| |
|
|
| T |
5605395 |
agaagcttgtgttactcgccataatgctgtgaagagattcact |
5605437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 232 - 405
Target Start/End: Original strand, 5858211 - 5858384
Alignment:
| Q |
232 |
tgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctc |
331 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
5858211 |
tgacagatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagggttccattaaattgacaaaaagaaagatccaattcagataactgcctc |
5858310 |
T |
|
| Q |
332 |
aatttgccaatagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
5858311 |
aagttgccaatagagctaggtaatggtccagagaagtttgtgtcactcactctaattctatgaagagattcact |
5858384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 102 - 374
Target Start/End: Complemental strand, 5583520 - 5583248
Alignment:
| Q |
102 |
caagattctccagtccttcaaagttagaagataatggaatttcgccacttaaactattatctgaaaggtctaggtgggtaaggtttttgaccatgccaaa |
201 |
Q |
| |
|
||||||| | |||||||||||||| | ||| ||| |||||| |||||||||| ||||| ||||||| ||| |||||||||||||| |||| ||||| |
|
|
| T |
5583520 |
caagattgtgcagtccttcaaagtgattggatgatgaaatttcaccacttaaacgattatgagaaaggtttagacgggtaaggtttttggccatcccaaa |
5583421 |
T |
|
| Q |
202 |
tggtggcattggacctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaa |
301 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| ||| || || | |||||||||||||| |||| |||||||||||||||| || |||| |
|
|
| T |
5583420 |
tggtggcatttgacctgtgaaactattagatgacaaatccatgtatctcagttttgtgaggtttgacagtgaaaagggaagtgttccattaagttcacaa |
5583321 |
T |
|
| Q |
302 |
ctggaaagatccaatttagataagtgcctcaatttgccaatagagctaggtaatgctccagagaagtttgtgt |
374 |
Q |
| |
|
| ||||||||||||| |||||| |||| || || ||||||||| || ||||||||||||||| |||||| |
|
|
| T |
5583320 |
ttcgaaagatccaattcagataaatgccccatgttaccaatagagtatggaaatgctccagagaagcttgtgt |
5583248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 5853152 - 5852966
Alignment:
| Q |
146 |
ccacttaaactattatctgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcattggacctgtgaaactattgtttgacaaatccaagt |
245 |
Q |
| |
|
|||||||||||||||| || ||||||| |||| ||||||||||| |||| | ||||| ||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
5853152 |
ccacttaaactattataagataggtctatgtggttaaggtttttggccatactaaatgatggtatcggacctgtgaaactgttaaatgacaaatccaagt |
5853053 |
T |
|
| Q |
246 |
aactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctca |
332 |
Q |
| |
|
|||| || | ||| |||||||| |||||||| ||||||||||||||||||||| || | ||||||||||||| | |||||||||||| |
|
|
| T |
5853052 |
aacttagttctgttaggtttgaaaatgaattgggaagtgttccattaaattgagaattagaaagatccaattcatataagtgcctca |
5852966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 332
Target Start/End: Original strand, 5553194 - 5553456
Alignment:
| Q |
68 |
ccatcgatagaattataacttaagtcaatgatttcaagattctccagtccttcaaagttagaagataatggaatttcgccacttaaactattatctgaaa |
167 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | | |||||||| |||||||||| || | |||| ||| || || |||||||||||||||| |||| |
|
|
| T |
5553194 |
ccattgatagaattataactcaagtcaaggttaacaagattcagaagtccttcaacgtgaaaagaagatgaaacctcaccacttaaactattataagaaa |
5553293 |
T |
|
| Q |
168 |
ggtctaggtgggtaaggtttttgaccatgccaaatggtggcattggacctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttga |
267 |
Q |
| |
|
|||||| |||| ||||||||||| |||| | ||||| ||| || |||||||||||||| || |||||||||||||||||| || | ||| |||||||| |
|
|
| T |
5553294 |
ggtctatgtggttaaggtttttggccatactaaatgatggtatcggacctgtgaaactgttaaatgacaaatccaagtaacttagttctgttaggtttga |
5553393 |
T |
|
| Q |
268 |
caatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctca |
332 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || | ||||||||||| || |||||||||||| |
|
|
| T |
5553394 |
aaatgaattgggaagtgttccattatattgagaattagaaagatccaa--tatataagtgcctca |
5553456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 374
Target Start/End: Complemental strand, 5571357 - 5571041
Alignment:
| Q |
58 |
aggaattctgccatcgatagaattataacttaagtcaatgatttcaagattctccagtccttcaaagttagaagataatggaatttcgccacttaaacta |
157 |
Q |
| |
|
|||||| || |||| ||||||||||| || ||||||||| | ||||| | | ||||||||||||| ||||||| ||||||||| |||||||||| | |
|
|
| T |
5571357 |
aggaatgctcccattgatagaattatcacgcaagtcaatgctgacaagactgtgtagtccttcaaagtgagaagattttggaatttcaccacttaaacga |
5571258 |
T |
|
| Q |
158 |
ttatctgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcattggacctgtgaaactattgtttgacaaatccaagtaactgaggtgtg |
257 |
Q |
| |
|
|||| ||||||||||||||| |||| | |||| ||||||||||| |||||||||||| | || |||| ||||||||| | | | || || | || |
|
|
| T |
5571257 |
ttatgagaaaggtctaggtggataagatatttggacatgccaaatgatggcattggaccagcaaagttattagatgacaaatcaatgcatctaagctctg |
5571158 |
T |
|
| Q |
258 |
tgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgccaatagagctaggtaatgc |
357 |
Q |
| |
|
| |||||||||| |||||| ||||||||||||||||||| |||| | |||||||||||| |||||| ||||||| || |||||||| || ||||| |
|
|
| T |
5571157 |
taaggtttgacagtgaattgggaagtgttccattaaatttacaatttaaaagatccaattcagataaatgcctcatgttaccaatagaatatggaaatgc |
5571058 |
T |
|
| Q |
358 |
tccagagaagtttgtgt |
374 |
Q |
| |
|
|||||| ||| |||||| |
|
|
| T |
5571057 |
tccagaaaagcttgtgt |
5571041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 115 - 347
Target Start/End: Complemental strand, 252514 - 252282
Alignment:
| Q |
115 |
tccttcaaagttagaagataatggaatttcgccacttaaactattatctgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcattgga |
214 |
Q |
| |
|
||||||||||| |||||| ||||||| | |||||||||| ||| | |||||| ||||||||| || |||||| |||||||||||| ||||| ||| |
|
|
| T |
252514 |
tccttcaaagtgagaagagggtggaattgcaccacttaaaccattttgaaaaaggtgtaggtgggtgagttttttggccatgccaaatgatggcaacgga |
252415 |
T |
|
| Q |
215 |
cctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatcca |
314 |
Q |
| |
|
|| |||||| | || ||| ||||| | || | |||| | ||||||||||||||||||||| |||||||| |||||||||||||| ||||| || | |
|
|
| T |
252414 |
ccagtgaaattgttaaatgaaaaatctaggtgattgagttttgtgaggtttgacaatgaattgggaagtgtaccattaaattgacagtgagaaaggtcta |
252315 |
T |
|
| Q |
315 |
atttagataagtgcctcaatttgccaatagagc |
347 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |
|
|
| T |
252314 |
attcagataagtgcctcaagttgccaatagagc |
252282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 405
Target Start/End: Original strand, 3749108 - 3749272
Alignment:
| Q |
241 |
caagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgcca |
340 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| | |||| || ||| |
|
|
| T |
3749108 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataattttctcaggtttcca |
3749207 |
T |
|
| Q |
341 |
atagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
||| | |||||||||||||| |||||||||||| ||| ||| |||| | |||||||||||||| |
|
|
| T |
3749208 |
ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcact |
3749272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 332
Target Start/End: Complemental strand, 5539440 - 5539220
Alignment:
| Q |
112 |
cagtccttcaaagttagaagataatggaatttcgccacttaaactattatctgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcatt |
211 |
Q |
| |
|
|||||||||||| | |||||| ||||||| | |||||||| | ||||| |||||||||| ||| | ||||||||| |||||||||||| ||| ||| |
|
|
| T |
5539440 |
cagtccttcaaaatgggaagatgatggaatggcaccacttaagcgattatgggaaaggtctaagtgtgcaaggttttttgccatgccaaatgatggtatt |
5539341 |
T |
|
| Q |
212 |
ggacctgtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagat |
311 |
Q |
| |
|
||||||||||| || || ||||||||| | ||| || || | | | ||||||||||||||||| |||||| |||||||||| | | | | ||||||| |
|
|
| T |
5539340 |
ggacctgtgaagctgttaaatgacaaatctatgtatctaagttctataaggtttgacaatgaattgggaagtattccattaaaattgctattagaaagat |
5539241 |
T |
|
| Q |
312 |
ccaatttagataagtgcctca |
332 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
5539240 |
ccaattcagataagtgcctca |
5539220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 332
Target Start/End: Original strand, 5559042 - 5559256
Alignment:
| Q |
118 |
ttcaaagttagaagataatggaatttcgccacttaaactattatctgaaaggtctaggtgggtaaggtttttgaccatgccaaatggtggcattggacct |
217 |
Q |
| |
|
|||| ||| ||||||| |||||||| |||||||| ||||| ||||||||||||||| |||| ||||| || ||| ||||| ||||||||||||| |
|
|
| T |
5559042 |
ttcagagtgagaagatgatggaattgtaccacttaattgattatgagaaaggtctaggtggataagacttttggccttgcaaaatgatggcattggacct |
5559141 |
T |
|
| Q |
218 |
gtgaaactattgtttgacaaatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatt |
317 |
Q |
| |
|
||||| || || ||||||||| | ||| || || | ||| ||| |||| | |||||| ||||||| |||||||| | || | | ||||||||||||| |
|
|
| T |
5559142 |
gtgaagctgttaaatgacaaatctatgtatctaagttctgtaaggattgagagtgaattgggaagtggtccattaagtgtactattagaaagatccaatt |
5559241 |
T |
|
| Q |
318 |
tagataagtgcctca |
332 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
5559242 |
cagataagttcctca |
5559256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 5886286 - 5886234
Alignment:
| Q |
353 |
aatgctccagagaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
5886286 |
aatgctccagagaagcttgtgttactcactctaatgctatgaagatattcact |
5886234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 405
Target Start/End: Complemental strand, 5895126 - 5895079
Alignment:
| Q |
358 |
tccagagaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||||||||||||| |
|
|
| T |
5895126 |
tccagagaagcttgtgttacgcaatataatgctatgaagagattcact |
5895079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 5895230 - 5895194
Alignment:
| Q |
254 |
tgtgtgaggtttgacaatgaatttggaagtgttccat |
290 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5895230 |
tgtgtgaggtttgacagtgaattgggaagtgttccat |
5895194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 405
Target Start/End: Original strand, 1483221 - 1483375
Alignment:
| Q |
251 |
aggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgccaatagagctag |
350 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||| | | |
|
|
| T |
1483221 |
aggtgtgtgaggttggacattgaattgggaagtgttccattaaattgacagtaaggaagatccaattcagataagtacctcaatttgccaatagagtttg |
1483320 |
T |
|
| Q |
351 |
gtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcact |
405 |
Q |
| |
|
||||| |||| || || |||||||||| ||| |||| ||| ||||||||||||| |
|
|
| T |
1483321 |
gtaattctcctgataaacttgtgtaactaactctaattctacgaagagattcact |
1483375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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