View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10960_high_7 (Length: 400)
Name: NF10960_high_7
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 28399073 - 28399452
Alignment:
| Q |
16 |
atatcgtaggataagattactctcataaaccttgatgtattcatatttatgagtaacttgttatactattatattcattaatgatgcctaattaagaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28399073 |
atatcgtaggataagattactctcataaaccttgatgtattcatatttatgagtaacttgttatactattatattcattaatgatgcctaattaagaaca |
28399172 |
T |
|
| Q |
116 |
ctagacaagaggnnnnnnnnncaaacagtttgctaaacagtttttcccctaaaaggaaaagtactcaacagtttttaaaacaaacagatatactaagaaa |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28399173 |
ctagacaagagggaaaagaaacaaacagtttgctaaacagtttttcccctaaaaagaaaagtactcaacagtttttaaaacaaacagatatactaagaaa |
28399272 |
T |
|
| Q |
216 |
catagatacataagtgaaagaataatcaaagacaaatccatcataaaaataccaata---tattaatcaatcggaatctatacatattagtaattaaatt |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28399273 |
catagatacataagtgcaagaataatcagagacaaatctatcataaaaataccaatatattattaatcaatcggaatctatacatattagtaattaaatt |
28399372 |
T |
|
| Q |
313 |
caaaaacacttcataacatattttaaaatcttttcgaatccatcattcacaatatttagttcttgaaattccttcttctc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28399373 |
caaaaacacttcataacatattttaaaatcttttcgaatccatcattcacaatatttagttcttgaaattccttcatctc |
28399452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University