View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10960_low_1 (Length: 580)
Name: NF10960_low_1
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 51823548 - 51823955
Alignment:
| Q |
1 |
ggctgaaaaacaacctttgcaaagtggaaaaacaatacaaaaaaggtaaagagctcaaattcctaagataaagattatagtgaaatcatctcaaagggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823548 |
ggctgaaaaacaacctttgcaaagtggaaaaacaatacaaaaaagggaaagagctcaaatactaaagataaagattatagtgaaatcatctcaaagggga |
51823647 |
T |
|
| Q |
101 |
atgaattttggattggtaaaggtggaataaataaattttactggaagaaagtcaggtgctatagttgtcaaagttttggtcattttgcatatgagtgaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823648 |
atgaattttggattggtaaaggtggaataaataaattttactggaagaaagtcaggtgctaa--ttgtcaaagttttggtcattttgcatatgagtgaag |
51823745 |
T |
|
| Q |
201 |
aagcagcaaatcactaagagcaaatgctgattatgaagcactagttgttgaagaccactcaactgattaagatcatgtaaagattaaagttatgacttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823746 |
aagcagcaaatcactaagagcaaatgctgattatgaagcactagttgttgaagaccactcaactgattaagatcatgtaaagattaaagttatgacttga |
51823845 |
T |
|
| Q |
301 |
atgaaacttatgcaaaaaacttactctacttctagcaaaatgtcaataatcaactcatttatttgtatttcttttggcgttaaccctcgcataagtaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823846 |
atgaaacttatgcaaaaaacttactctacttctagcaaaatgtcaataatcaactcatttatttgtatttcttttggcgttaaccctcgcataagtaaag |
51823945 |
T |
|
| Q |
401 |
taagtcaata |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
51823946 |
taagtcaata |
51823955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 51823993 - 51824042
Alignment:
| Q |
415 |
tcaaatttctcaacttaatcttaaactggtctacgggtcaaatggaggac |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823993 |
tcaaatttctcaacttaatcttaaactggtctacgggtcaaatggaggac |
51824042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 529 - 562
Target Start/End: Original strand, 51824107 - 51824140
Alignment:
| Q |
529 |
atttcaaatcataattacacccctaagctaatag |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
51824107 |
atttcaaatcataattacacccctaagctaatag |
51824140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 51834434 - 51834466
Alignment:
| Q |
170 |
aaagttttggtcattttgcatatgagtgaagaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
51834434 |
aaagttttggtcattttgcatatgagtgaagaa |
51834466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University