View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10960_low_10 (Length: 298)

Name: NF10960_low_10
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10960_low_10
NF10960_low_10
[»] chr4 (13 HSPs)
chr4 (1-287)||(5565148-5565434)
chr4 (17-287)||(5605482-5605752)
chr4 (18-271)||(5858429-5858682)
chr4 (17-229)||(5885978-5886190)
chr4 (59-271)||(3749358-3749570)
chr4 (1-228)||(5570755-5570982)
chr4 (1-228)||(5582962-5583189)
chr4 (53-287)||(5847705-5847939)
chr4 (22-210)||(5852656-5852844)
chr4 (17-258)||(5894794-5895035)
chr4 (19-286)||(5553575-5553842)
chr4 (1-218)||(5559357-5559574)
chr4 (174-255)||(5613627-5613708)
[»] chr8 (1 HSPs)
chr8 (102-224)||(1485703-1485825)
[»] scaffold0454 (1 HSPs)
scaffold0454 (102-224)||(884-1007)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 5565148 - 5565434
Alignment:
Q  1 gagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565148 gagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagg 5565247  T
Q  101 gtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5565248 gtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttctctagttttgaaaggg 5565347  T
Q  201 aagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcat 287  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565348 aagaatcaaggggtcctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcat 5565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 5605482 - 5605752
Alignment:
Q  17 gataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaa 116  Q
    |||||||||||| | |||| ||||  ||| ||||| ||||||||||||||||| || ||||| ||||||||   |||| |||||||||| ||||||||||    
T  5605482 gataagtcaatatctgacagtgttctaatttgaaatatattttgtggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaa 5605581  T
Q  117 aattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacc 216  Q
    ||||||||||||||| ||||||||||||||||||||| ||  || |||||  |||||| |||| ||||||||   |||  ||||||||||||||||| ||    
T  5605582 aattggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaaccttgctagggaagaatcaaggggtcc 5605681  T
Q  217 tgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcat 287  Q
    ||||| |||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5605682 tgaaaaaccacagtctgacatacctaattcttgtaggtcacggagcggcaacaaaagactgctccattcat 5605752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 5858429 - 5858682
Alignment:
Q  18 ataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaa 117  Q
    |||||||||| |||||||||||| |||||||||| || || ||||||||||||||||  ||  |||||  | ||||||||||||| |||| |||||||||    
T  5858429 ataagtcaatcacagacaatgttccaatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaa 5858528  T
Q  118 attggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacct 217  Q
    ||| ||||||||||  || ||||||||||||||||  || ||| ||||| |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  5858529 atttgcaaatgtttcaggaactggggatgaaaaatagttctcatcaagaataatgactgataggttctctagttttgttagggaagaatcaaggggacct 5858628  T
Q  218 gaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaa 271  Q
     | |||||||||   |||||||  |||||||||||||  || ||||||||||||    
T  5858629 aatagaccacaggaagacatgctcaattcttgtaggtttcgcaacggcaacaaa 5858682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 5886190 - 5885978
Alignment:
Q  17 gataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaa 116  Q
    |||||||||||||  |||| ||||  ||| || || || ||||||||||||||| | ||||| || |||| |  |||| |||||||||| ||||||||||    
T  5886190 gataagtcaataattgacagtgttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagattgagggtggttaggtttttaa 5886091  T
Q  117 aattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacc 216  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||    
T  5886090 aattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttgaaagggaggaatcaaggggtcc 5885991  T
Q  217 tgaaagaccacag 229  Q
    ||| |||| ||||    
T  5885990 tgatagactacag 5885978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 59 - 271
Target Start/End: Original strand, 3749358 - 3749570
Alignment:
Q  59 tgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgt 158  Q
    ||||||||||||||||||||  |||||    |||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||| ||      
T  3749358 tgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcc 3749457  T
Q  159 caccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacg 258  Q
    || ||||| ||||||||||||||||||||||| |||  ||||||||||||||||| ||||| | | |||||   |||||||  |||||||| | ||||||    
T  3749458 catcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcttgcaagtcacg 3749557  T
Q  259 gaacggcaacaaa 271  Q
     ||||||||||||    
T  3749558 caacggcaacaaa 3749570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5570982 - 5570755
Alignment:
Q  1 gagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagg 100  Q
    |||||||||||| |||||||| |||||||  ||||||||| |||| ||||| |||||||||||||||||||| ||||| ||||||  |  ||||||||||    
T  5570982 gagattgtagttgaatgataaatcaataaatgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagg 5570883  T
Q  101 gtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggg 200  Q
    ||||| || ||||||||||||| |||||||| ||||||| ||||||| ||||  ||  || ||||| |||||||||||||||||| |||| |||  ||||    
T  5570882 gtggttagttttttaaaattggaaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagtcttgttaggg 5570783  T
Q  201 aagaatcaaggggacctgaaagaccaca 228  Q
    |||||  |||||| ||||| ||| ||||    
T  5570782 aagaagaaaggggtcctgatagatcaca 5570755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5583189 - 5582962
Alignment:
Q  1 gagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagg 100  Q
    |||||||||||| || |||||||||||||  || || ||| |||| ||||| ||  ||| ||||||| |||| ||||| ||||||  | |||||||||||    
T  5583189 gagattgtagttgaaggataagtcaataaatgagaacgttccaatttgaaagatggtttttggaaatttaccagtcaatccacaagatgcaagactgagg 5583090  T
Q  101 gtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggg 200  Q
    ||||| |  ||||| ||||||| |||||||||||||||||||||||||||||| ||  || ||||| |||||||||||||||||| |||| |||  ||||    
T  5583089 gtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatgactgataggttctttagtcttgttaggg 5582990  T
Q  201 aagaatcaaggggacctgaaagaccaca 228  Q
    ||||||||||||||||||| ||| ||||    
T  5582989 aagaatcaaggggacctgatagatcaca 5582962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 287
Target Start/End: Complemental strand, 5847939 - 5847705
Alignment:
Q  53 atattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaat 152  Q
    ||||||||||||||||||||| |||| ||||| | |  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  5847939 atattttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagt 5847840  T
Q  153 tattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtag 252  Q
    | || |||||||||  |||||| |  |||||||||||| |||  ||||||||||||||||| ||||| ||| ||||    |||||||  || | ||| ||    
T  5847839 tgttctcaccaagaacaatgaccgtcaggttctctagtcttgttagggaagaatcaaggggtcctgatagatcacaatcagacatgctcaacttttgcag 5847740  T
Q  253 gtcacggaacggcaacaaaagactgctccattcat 287  Q
    |||||| || |||||||||  | ||||||||||||    
T  5847739 gtcacgcaaaggcaacaaagcattgctccattcat 5847705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 5852844 - 5852656
Alignment:
Q  22 gtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattg 121  Q
    |||||||||||||| |||| |||||||||| || || |||||||||||||| ||||| |||||||||  |||||| |||||||||||||||| ||||||     
T  5852844 gtcaataacagacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctgaaagactaagggtggtcaggttttgaaaatta 5852745  T
Q  122 gcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaag 210  Q
    |||||||||| ||| || ||||| |||||||| ||   | ||||| |||||||||||||||||  ||||||||| ||||||||||||||    
T  5852744 gcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagttttgatagggaagaatcaag 5852656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 5895035 - 5894794
Alignment:
Q  17 gataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaa 116  Q
    |||||||||||||| |||| |||   ||| || || || |||||||||||||||||| |||| ||||| | |  |||| |||||||||| ||||||||||    
T  5895035 gataagtcaataactgacagtgtcctaatttggaagatcttttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaa 5894936  T
Q  117 aattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacc 216  Q
    ||||||||||||||| ||||| || |||||||||||| ||   |  |||| |||||||||| ||||||| |||| |||| ||||||||||||||||  ||    
T  5894935 aattggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagtcttgatagggaagaatcaagggatcc 5894836  T
Q  217 tgaaagaccacagcttgacatgcctaattcttgtaggtcacg 258  Q
    ||| | | ||||  | |||||||  |||||||||||||||||    
T  5894835 tgacaaatcacaattagacatgctcaattcttgtaggtcacg 5894794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 5553575 - 5553842
Alignment:
Q  19 taagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaa 118  Q
    |||||||||||| || | | ||||||| ||||| || ||||||||||||||||| || || ||||||  |  |||||| |||||||||||||||| ||||    
T  5553575 taagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaa 5553674  T
Q  119 ttggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaagggaagaatcaaggggacctg 218  Q
    ||||||||||||| ||| || ||||| |||||||| ||   | ||||| ||||||| |||||||| | ||||||||| ||||||||||| || || ||||    
T  5553675 ttggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctg 5553774  T
Q  219 aaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattca 286  Q
      ||| ||||| |  ||||||  || |||||||| ||||  | ||||||||||  | |||||||||||    
T  5553775 ctagatcacagttatacatgctcaactcttgtagttcacacagcggcaacaaagcattgctccattca 5553842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5559357 - 5559574
Alignment:
Q  1 gagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagg 100  Q
    |||||| | ||| |||| |||||||||||  ||||||||| |||| || || || || |||||||||||| | ||||| | |||| || ||||||| |||    
T  5559357 gagatttttgtttaatgttaagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaagg 5559456  T
Q  101 gtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggg 200  Q
    || ||||  ||| | ||||||| ||||||||  ||||| ||||| |||||||| ||  || ||||| ||||||  ||||  |||| |||| |||| || |    
T  5559457 gttgtcaaatttctgaaattggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttgacagag 5559556  T
Q  201 aagaatcaaggggacctg 218  Q
    | ||||||||||| ||||    
T  5559557 atgaatcaaggggtcctg 5559574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 5613627 - 5613708
Alignment:
Q  174 ctgataggttctctagttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtc 255  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| |||  |||| | |||||||  | ||||||||||||    
T  5613627 ctgataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtc 5613708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 1485703 - 1485825
Alignment:
Q  102 tggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggga 201  Q
    ||||||||||||||||||||| |||||||| ||| | ||| ||||||| ||| || | | ||||| ||||||  | ||||||||||||||||||||||||    
T  1485703 tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga 1485802  T
Q  202 agaatcaaggggacctgaaagac 224  Q
     ||||||| ||| ||||| ||||    
T  1485803 ggaatcaacgggtcctgatagac 1485825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 884 - 1007
Alignment:
Q  102 tggtcaggtttttaaaatt-ggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggg 200  Q
    ||||||||||||||||||| || |||||||| ||| | ||| ||||||| ||| || | | ||||| ||||||  | |||||||||||||||||||||||    
T  884 tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg 983  T
Q  201 aagaatcaaggggacctgaaagac 224  Q
    | ||||||| ||| ||||| ||||    
T  984 aggaatcaacgggtcctgatagac 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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