View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10960_low_11 (Length: 296)

Name: NF10960_low_11
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10960_low_11
NF10960_low_11
[»] chr7 (4 HSPs)
chr7 (19-258)||(8022213-8022447)
chr7 (177-258)||(37720558-37720639)
chr7 (171-258)||(27916434-27916521)
chr7 (170-258)||(28710395-28710483)
[»] chr8 (2 HSPs)
chr8 (180-258)||(7304964-7305042)
chr8 (216-258)||(7299891-7299933)
[»] chr2 (2 HSPs)
chr2 (191-258)||(43077205-43077272)
chr2 (171-257)||(6983185-6983271)
[»] chr3 (4 HSPs)
chr3 (170-258)||(29247296-29247384)
chr3 (165-258)||(36545183-36545276)
chr3 (165-258)||(36563038-36563131)
chr3 (179-258)||(46930023-46930103)
[»] chr1 (3 HSPs)
chr1 (165-258)||(19940603-19940696)
chr1 (173-256)||(4635751-4635834)
chr1 (216-258)||(4941199-4941241)
[»] scaffold0693 (1 HSPs)
scaffold0693 (171-258)||(1146-1233)
[»] chr4 (5 HSPs)
chr4 (171-258)||(53482372-53482459)
chr4 (209-258)||(4687367-4687416)
chr4 (171-258)||(38509913-38510000)
chr4 (172-258)||(6956489-6956575)
chr4 (170-258)||(27756454-27756542)
[»] scaffold0027 (1 HSPs)
scaffold0027 (181-258)||(14224-14302)
[»] scaffold0009 (1 HSPs)
scaffold0009 (165-258)||(106495-106588)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 8022447 - 8022213
Alignment:
Q  19 caggacctcaatgtatgtagagtatgcagatcaaatattcaccaccatttaatcatccatctttctgtgtannnnnnnnnaatcgaaatagctgttagac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||          |||||||||||||||||||    
T  8022447 caggacctcaatgtatgtagagtatgcagatcaaatattcacca---tttaatcatccatctgtctgtgtattttctttttatcgaaatagctgttagac 8022351  T
Q  119 ccaaaagagaaatgttaaca-cactggttcctactgcctcctccgaagcacaggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttc 217  Q
    |||||||||||||||||||  ||||||| ||| ||||||||   | ||||| ||||||||||||||||| ||||| |||| |||||||| ||||| | ||    
T  8022350 ccaaaagagaaatgttaaccgcactggtgcctcctgcctcc---ggagcacgggttaaagaatcaaatgcagcaagtattgtattagaaggtgtgatgtc 8022254  T
Q  218 aactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||||||||| ||||||| |||||||||| |||||||||    
T  8022253 aactcctcaaaaacataaaaaatgttattttcactttaaaa 8022213  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 37720639 - 37720558
Alignment:
Q  177 gaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||||||||||| || ||||  ||| |||| |||||| ||||||||||||||||||||||  ||||||||| |||||||||    
T  37720639 gaatcaaatgtagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 37720558  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 27916521 - 27916434
Alignment:
Q  171 gttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||||||||||||| ||  || |||| |||| |||  |||||| |||||||||||||| | |||||| ||||||||| |||||||||    
T  27916521 gttaaagaatcaaatataataagtattgtattggaatttgtgctgtcaactcctcaaaaacgtaaaatgtgttattttcactttaaaa 27916434  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 28710483 - 28710395
Alignment:
Q  170 ggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||| ||||||||||||| || ||||| ||| |||  ||||||   |||||||||||| |||||||  ||||||||| |||||||||    
T  28710483 ggttaaggaatcaaatgtagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaa 28710395  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 7305042 - 7304964
Alignment:
Q  180 tcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||||||||||||||||||||  ||| |||| | ||||||||||||||||| ||||||||||||||| |||||||||    
T  7305042 tcaaatgtagcaaatattatattgaaacttgtgttgtcaactcctcaaaagcagaaaatatgttattttcactttaaaa 7304964  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 7299933 - 7299891
Alignment:
Q  216 tcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  7299933 tcaactcctcaaaagcataaaatatgttattttcaatttaaaa 7299891  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 43077272 - 43077205
Alignment:
Q  191 aaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  43077272 aaatattatattggaatttgtgctatcaactcctcaaaagcataaaatatgttattttcaatttaaaa 43077205  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 6983271 - 6983185
Alignment:
Q  171 gttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaa 257  Q
    ||||| ||||||||| ||| || ||||| ||| |||| |||| | ||||||||| ||||||||||||  ||||||||| ||||||||    
T  6983271 gttaaggaatcaaatatagaaagtattacattggaacttgtggtgtcaactcctaaaaagcataaaaagtgttattttcactttaaa 6983185  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 29247296 - 29247384
Alignment:
Q  170 ggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||| |||| |||||||| |||||||| ||| |||| |||| | ||||||||||||||| ||||||  ||||||||| |||||||||    
T  29247296 ggttaaggaattaaatgtagaaaatattacattggaacttgtgttatcaactcctcaaaagtataaaaagtgttattttaactttaaaa 29247384  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 36545276 - 36545183
Alignment:
Q  165 gcacaggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||| |||||| ||| ||||||||| || |||| ||||  ||| |||| | ||||||||||||||||||||||  ||||||||| |||||||||    
T  36545276 gcactggttaacgaaacaaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 36545183  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 36563038 - 36563131
Alignment:
Q  165 gcacaggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||| |||||| ||| ||||||||| || |||| ||||  ||| |||| | ||||||||||||||||||||||  ||||||||| |||||||||    
T  36563038 gcactggttaacgaaacaaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 36563131  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 46930103 - 46930023
Alignment:
Q  179 atcaaatgtagcaaatattatattagaacgtgtgctttcaactcctc-aaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||||||||| |||||||| ||| |||  | |||| | |||| ||| |||| ||||||| ||||||||||||||||||||    
T  46930103 atcaaatgtagtaaatattacattggaatttatgctgttaacttctccaaaaacataaaaaatgttatttttactttaaaa 46930023  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 19940696 - 19940603
Alignment:
Q  165 gcacaggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||| |||||| ||||||||||||| || ||||  |||  ||| | |||| ||||||||||||||||||||||  ||||||||| |||||||||    
T  19940696 gcactggttaaggaatcaaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 19940603  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 4635834 - 4635751
Alignment:
Q  173 taaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaa 256  Q
    ||||| ||||||| ||| || ||||| ||| |||  | |||| ||||||||||| |||||||||| |||||||||| |||||||    
T  4635834 taaagtatcaaatatagtaagtattacattggaaaatttgctgtcaactcctcataagcataaaaaatgttattttcactttaa 4635751  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 4941241 - 4941199
Alignment:
Q  216 tcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  4941241 tcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

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Target: scaffold0693 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 1146 - 1233
Alignment:
Q  171 gttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||| ||||||||| ||| || ||||  ||| ||||||||| |  |||||| | |||||||||||| ||||||||||||||||||||    
T  1146 gttaaggaatcaaatttagtaagtattgcattggaacgtgtgatagcaactcattaaaagcataaaaaatgttatttttactttaaaa 1233  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 53482372 - 53482459
Alignment:
Q  171 gttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||| ||||||||| ||| || ||||  ||| ||||||||| |  |||||| | |||||||||||| ||||||||||||||||||||    
T  53482372 gttaaggaatcaaatttagtaagtattgcattggaacgtgtgatagcaactcattaaaagcataaaaaatgttatttttactttaaaa 53482459  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 4687416 - 4687367
Alignment:
Q  209 tgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||| |||||| |||||||||||||||  |||||||||||||||||||    
T  4687416 tgtgctatcaacttctcaaaagcataaaaagtgttatttttactttaaaa 4687367  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 38509913 - 38510000
Alignment:
Q  171 gttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    ||||| ||||||||||||  |||||||  ||| |||| |||| | ||||||||||||||| || |||  ||||||||||| |||||||    
T  38509913 gttaaggaatcaaatgtaataaatattgcattggaacttgtgttgtcaactcctcaaaagtatgaaaagtgttatttttattttaaaa 38510000  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 6956489 - 6956575
Alignment:
Q  172 ttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||||||||||||||  ||||||||||||| ||  |||| | ||||||  | ||||| |||||| ||||||||||  ||||||||    
T  6956489 ttaaagaatcaaatgtaaaaaatattatattataatttgtgttatcaacttttaaaaagtataaaaaatgttattttccctttaaaa 6956575  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 27756454 - 27756542
Alignment:
Q  170 ggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||||| ||||||||||||| || ||||| |||  ||  |||| | ||||||| ||||||||||||||  ||||||||| | |||||||    
T  27756454 ggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 14224 - 14302
Alignment:
Q  181 caaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatt-tttactttaaaa 258  Q
    ||||||||| |||||||  |||||||| |||| | ||||||||||||||||||||||  ||||||| |||| |||||||    
T  14224 caaatgtagtaaatattgcattagaacttgtgttgtcaactcctcaaaagcataaaaagtgttattctttattttaaaa 14302  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 106588 - 106495
Alignment:
Q  165 gcacaggttaaagaatcaaatgtagcaaatattatattagaacgtgtgctttcaactcctcaaaagcataaaatatgttatttttactttaaaa 258  Q
    |||| |||||| | ||||||| ||  ||| |||| ||| |||| |||||| |||||| ||| |||||||||||  ||||||||| |||||||||    
T  106588 gcactggttaagggatcaaatataataaacattaaattggaacttgtgctatcaacttctcgaaagcataaaaagtgttattttcactttaaaa 106495  T

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