View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10960_low_13 (Length: 262)
Name: NF10960_low_13
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_low_13 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 7424839 - 7424618
Alignment:
| Q |
41 |
aaccaaacaccatatctaacaaccaaaacctgctcccc-ttcaaacccctcaggccggctttctcctgaggcattctcccggatcccaacaccattcata |
139 |
Q |
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| T |
7424839 |
aaccaaacaccatatctaacaaccaaaacctgctcccccttcaaacccctcaggccggctttctcttgaggcattctcccggatcccaacaccattcata |
7424740 |
T |
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| Q |
140 |
aaacatacaagtaggcgttttcagccgatgtaccttccacctccatgagagcaccttcacttcctctaccaatttagttggnnnnnnnnnntaccattat |
239 |
Q |
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| T |
7424739 |
aaacataaaagtaggcgttttcagccgatgtaccttccacctccatgagagcaccttcacttcctctaccaatttagttgg-aaaaaaaaataccattat |
7424641 |
T |
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| Q |
240 |
tgcataacaattaaactattctt |
262 |
Q |
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| T |
7424640 |
tgcataacaattaaactattctt |
7424618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 7424862 - 7424833
Alignment:
| Q |
38 |
tataaccaaacaccatatctaacaaccaaa |
67 |
Q |
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| T |
7424862 |
tataaccaaacaccatatctaacaaccaaa |
7424833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 7424907 - 7424879
Alignment:
| Q |
12 |
acagaccacaaccaaaaagccatatttat |
40 |
Q |
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| T |
7424907 |
acagaccacaaccaaaaagccatatttat |
7424879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 243167 - 243264
Alignment:
| Q |
116 |
tcccggatcccaacaccattcataaaacatacaagtaggcgttttcagccgatgtaccttccacctccatgagagcaccttcacttcctctaccaatt |
213 |
Q |
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| T |
243167 |
tcccggatcccaaaaccattcttagaacatacatgaagatgttttcagccgatgtagattccaagtccaagagagaacgttcacttcctctaccaatt |
243264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 24356309 - 24356254
Alignment:
| Q |
38 |
tataaccaaacaccatatctaacaaccaaaacctgct-ccccttcaaacccctcaggc |
94 |
Q |
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| T |
24356309 |
tataaccaaacaccatat--aacaaccaaaacctgctcccccttcaaaccccttaggc |
24356254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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