View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10960_low_15 (Length: 250)
Name: NF10960_low_15
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34299245 - 34299389
Alignment:
| Q |
1 |
ttgagaggacgaatggagatatctgttcacaattctttttatgttaacttgtaatttatttcttaaacagtcgttacctgttgtcggataattataatga |
100 |
Q |
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| T |
34299245 |
ttgagaggacgaatagagatatctgttcacaattctttttatgttaacttgtaatttatttcttaaacagtcgttacctgttgtcggataattataatga |
34299344 |
T |
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| Q |
101 |
ttcgtattattatggctggtttatatattgtggcataaggaatat |
145 |
Q |
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| T |
34299345 |
ttcgtattattatggctggtttatatattgtggcataaggaatat |
34299389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 34303150 - 34303221
Alignment:
| Q |
37 |
ttttatgttaacttgtaatttatttcttaaacagtcgttacctgttgtcggataattataatgattcgtatt |
108 |
Q |
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| T |
34303150 |
ttttatgttaacttgtaatttttttcttaaacaatcgttacctatagtcggataattataatgattcttatt |
34303221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 34299395 - 34299447
Alignment:
| Q |
185 |
gacaattaatatgtacattttttaactagttttaattatttcattgcgtgttc |
237 |
Q |
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| T |
34299395 |
gacaattaatatgtacattttttaactagttttatttatttcattgcgtgttc |
34299447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 34303267 - 34303336
Alignment:
| Q |
168 |
ttgactggtttttatacg-acaattaatatgtacattttttaactagttttaattatttcattgcgtgtt |
236 |
Q |
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| T |
34303267 |
ttgactagtttttgtacgtataattaatatgtacattttttaaacagttttatttatttcattgcgtgtt |
34303336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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