View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10960_low_5 (Length: 435)

Name: NF10960_low_5
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10960_low_5
NF10960_low_5
[»] chr2 (17 HSPs)
chr2 (1-382)||(15023387-15023776)
chr2 (1-350)||(14551993-14552350)
chr2 (1-359)||(14850651-14851017)
chr2 (86-334)||(14575000-14575248)
chr2 (84-331)||(14567051-14567298)
chr2 (84-130)||(14494696-14494742)
chr2 (84-133)||(14152893-14152942)
chr2 (84-133)||(14476143-14476192)
chr2 (84-138)||(14485234-14485288)
chr2 (84-130)||(14502183-14502229)
chr2 (105-138)||(13707181-13707214)
chr2 (84-133)||(14144911-14144960)
chr2 (84-133)||(14162245-14162294)
chr2 (84-132)||(14165305-14165353)
chr2 (1-33)||(15007807-15007839)
chr2 (86-133)||(14481327-14481374)
chr2 (98-133)||(14520122-14520157)
[»] chr3 (1 HSPs)
chr3 (61-331)||(38525048-38525318)
[»] chr4 (1 HSPs)
chr4 (84-133)||(49553376-49553425)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 15023776 - 15023387
Alignment:
Q  1 agaagcacctttggatagaaaatattcaaacttaatttgatgatt--------ttaattccaagaacatagggttacctctaaccatgtggacaatgtca 92  Q
    |||||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||||||||    
T  15023776 agaagcacctttggatagaaaaaattcaaacttaatttgatgattcttcaagcttaattccaagaacctagggttacctctaaccatgtggacaatgtca 15023677  T
Q  93 gaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaattcatggtacccttttaatgatactgc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  15023676 gaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaatccatggtacccttttgatgatactgc 15023577  T
Q  193 gtatgtctgagtcggtgaaactgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctttgagtgc 292  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15023576 gtaagtctgagtcggtgaaactgtgatttttgaagaagtagagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctttgagtgc 15023477  T
Q  293 aaatccatgtgagaaaccgaatttgtcaatgaggtaggatactatgaatgggtttgaagtggtggtggtagtggtaaggaatctgagtgt 382  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15023476 aaatccatgtgagaaaccgaatttgtcaatgaggtaggatacgatgaatgggtttgaagtggtggtggtagtggtaaggaatctgagtgt 15023387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 14552350 - 14551993
Alignment:
Q  1 agaagcacctttggatagaaaatattcaaacttaatttgatgatt--------ttaattccaagaacatagggttacctctaaccatgtggacaatgtca 92  Q
    ||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  14552350 agaagcacctttggatagaaaatattcaaacttaatttgattattcttcaagcttaattccaagaacttagggttacatctaaccatgtggacaatgtca 14552251  T
Q  93 gaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaattcatggtacccttttaatgatactgc 192  Q
    || | |||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||  |||||| ||||||| |||| | |||    
T  14552250 gaggaagaagcacctatggagagtaaaaattgaaactttgggagaatccttttctgggtatcgcaggaaagaagccatggttcccttttgatgacattgc 14552151  T
Q  193 gtatgtctgagtcggtgaaactgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctttgagtgc 292  Q
    |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14552150 gtatatgtgagtcggtgaaaccgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgc 14552051  T
Q  293 aaatccatgtgagaaaccgaatttgtcaatgaggtaggatactatgaatgggtttgaa 350  Q
     ||| |||||||||| || |||||||  ||||||||||||||  |||||| |||||||    
T  14552050 gaattcatgtgagaatccaaatttgtggatgaggtaggatacggtgaatgagtttgaa 14551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 14850651 - 14851017
Alignment:
Q  1 agaagcacctttggatagaaaatattcaaacttaatttgatgatttt--------aattccaagaacatagggttacctctaaccatgtggacaatgtca 92  Q
    |||||||||||||||||||||||||||||||||||||| |||| | |        |||| ||||||| |||||||||||  ||||||  | |||||||||    
T  14850651 agaagcacctttggatagaaaatattcaaacttaatttcatgagtcttcaagctgaattgcaagaacttagggttacctacaaccatacgaacaatgtca 14850750  T
Q  93 gaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaattcatggtacccttttaatgatactgc 192  Q
    || | |||||| |||||||||| |||||| |||||||||||||| ||||||  ||||||||||||||||||||  |||||| |  |||| | ||| ||||    
T  14850751 gaggaagaagcacctttggagattaaaaactgaaactttgggaggatcgttaagtgggtattgcaggaaagaagccatggttcgattttgacgattctgc 14850850  T
Q  193 gtatgtctgagtcggtgaaactgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctttgagtgc 292  Q
    |||||||| ||||  ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14850851 gtatgtctaagtcattgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctctttggaagctttgagtgc 14850950  T
Q  293 aaatccatgtgagaaaccgaatttgtcaatgaggtaggatactatgaatgggtttgaagtggtggtg 359  Q
     ||| |||| ||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  14850951 gaattcatgagagaatccgaatttgtcgatgaggtaggatacggtgaatgggtttgaagtggtggtg 14851017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 86 - 334
Target Start/End: Complemental strand, 14575248 - 14575000
Alignment:
Q  86 aatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaattcatggtacccttttaatg 185  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||  |||||| | ||||| |||    
T  14575248 aatgtcagaggtagaagcacctttggagagtaaaaattgaaactttgggagaattcttttgtgggtatcgcaggaaagaagccatggttctcttttgatg 14575149  T
Q  186 atactgcgtatgtctgagtcggtgaaactgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctt 285  Q
    ||  |  |||| ||||||||  |||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  14575148 atgttttgtatatctgagtcattgaaaccgtgatttttgaagaagttgataactgaatcaggtttttgtgatgttttgaaataaagctgtttggaagctt 14575049  T
Q  286 tgagtgcaaatccatgtgagaaaccgaatttgtcaatgaggtaggatac 334  Q
    |||||||  || || ||| ||||||||||||||  ||||||||||||||    
T  14575048 tgagtgcggattcaggtgtgaaaccgaatttgtggatgaggtaggatac 14575000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 84 - 331
Target Start/End: Complemental strand, 14567298 - 14567051
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaattcatggtacccttttaa 183  Q
    |||||||||||   |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||  |||||| | ||||| |    
T  14567298 acaatgtcagattgagaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttttga 14567199  T
Q  184 tgatactgcgtatgtctgagtcggtgaaactgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagc 283  Q
    ||||  || |||||||||||||  ||||||  | ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  14567198 tgatgttgtgtatgtctgagtcattgaaaccataatttttgaagaagttaagaactgaatcaggttttagtgaggttttgaaataaagcggtttggaagc 14567099  T
Q  284 tttgagtgcaaatccatgtgagaaaccgaatttgtcaatgaggtagga 331  Q
    ||||||||||||| |||||||||| || || ||||  |||||||||||    
T  14567098 tttgagtgcaaattcatgtgagaacccaaacttgtggatgaggtagga 14567051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 14494742 - 14494696
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactt 130  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  14494742 acaatgtcagaggtagaagcgcctttggagagaaaaaattgaaactt 14494696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 14152942 - 14152893
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  14152942 acaatgtcagaggtagaagcgcctctggagaggaaaaattgaaactttgg 14152893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 14476143 - 14476192
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  14476143 acaatgtcagatgtagaagcacctttggagagaaaaaattgaaactttgg 14476192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 14485288 - 14485234
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgggagaa 138  Q
    |||||||||||  ||||||| ||||||||||| ||||||||||||||||| ||||    
T  14485288 acaatgtcagagttagaagcacctttggagagaaaaaattgaaactttggcagaa 14485234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 14502229 - 14502183
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactt 130  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  14502229 acaatgtcagaggtagaagcacctttggagagaaaaaattgaaactt 14502183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 13707181 - 13707214
Alignment:
Q  105 cctttggagagtaaaaattgaaactttgggagaa 138  Q
    ||||||||||||||||||||||||||||||||||    
T  13707181 cctttggagagtaaaaattgaaactttgggagaa 13707214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 14144960 - 14144911
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||    
T  14144960 acaatgtcagagttagaagcacctttggagagaaaaaattgaaactttgg 14144911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 14162245 - 14162294
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||    
T  14162245 acaatgtcagagttagaagcacctttggagagaaaaaattgaaactttgg 14162294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 14165305 - 14165353
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttg 132  Q
    |||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  14165305 acaatgtcagagttagaagcacctttggagagaaaaaattgaaactttg 14165353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15007839 - 15007807
Alignment:
Q  1 agaagcacctttggatagaaaatattcaaactt 33  Q
    |||||||||||||||||||||||||||||||||    
T  15007839 agaagcacctttggatagaaaatattcaaactt 15007807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 14481327 - 14481374
Alignment:
Q  86 aatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    ||||||||| |||||||| |||||||||||  ||||||||||||||||    
T  14481327 aatgtcagaggtagaagcacctttggagagacaaaattgaaactttgg 14481374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 14520157 - 14520122
Alignment:
Q  98 agaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    |||||| |||||||||||||||||||||||||||||    
T  14520157 agaagcacctttggagagtaaaaattgaaactttgg 14520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 61 - 331
Target Start/End: Original strand, 38525048 - 38525318
Alignment:
Q  61 tagggttacctctaaccatgtggacaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcagga 160  Q
    |||||||||||  ||||||  | ||||||||||| ||| || | |||||||||| ||||||||||||||||||||||||| |||| |||||||||||  |    
T  38525048 tagggttacctacaaccatacgaacaatgtcagaggtaaaaacacctttggagattaaaaattgaaactttgggagaatccttttatgggtattgcaaca 38525147  T
Q  161 aagaattcatggtacccttttaatgatactgcgtatgtctgagtcggtgaaactgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggtt 260  Q
    ||||| | | ||| | ||||| ||||| | | ||||||||||||  ||||||| |||||| ||||||||||||| ||||||||| |||||||||||||||    
T  38525148 aagaagttagggttctcttttgatgatgcggtgtatgtctgagtaagtgaaaccgtgattcttgaagaagttgataactgaatcgggtttttgtgaggtt 38525247  T
Q  261 ttgaaataaagctctttggaagctttgagtgcaaatccatgtgagaaaccgaatttgtcaatgaggtagga 331  Q
    ||||||  ||    ||  |||||||||| ||||||| |||||||||||| ||||||||  |||||||||||    
T  38525248 ttgaaacgaaagggttctgaagctttgattgcaaattcatgtgagaaactgaatttgtggatgaggtagga 38525318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 49553425 - 49553376
Alignment:
Q  84 acaatgtcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 133  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  49553425 acaatatcagaagtagaagcacctttggagagtaaaaattgaaactttgg 49553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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