View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10960_low_6 (Length: 421)
Name: NF10960_low_6
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 7387691 - 7387286
Alignment:
| Q |
19 |
catagcagtaattaaggttgtcaaagagatcttacattttacatgattagagaggggattgggtgttgagcaagttggagttcaattacattgtgatagt |
118 |
Q |
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| T |
7387691 |
catagcagtagttaaggttgtcaaagaggtcttacagtttacatgattagagagggaactgggtgttgagcaagttggagttcaattacattgtcgtagt |
7387592 |
T |
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| Q |
119 |
aagagtgtcatttatttaataaataattaggtgagacctaatacattaatgtgaagtttcnnnnnnntcaaagttatttgcatgtgaaaagatatgtata |
218 |
Q |
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| T |
7387591 |
acgagtgtcatttatttaataaataatcaggtgagacctaatacattcatgtgaagtttcaaaaaaatcagagttatttgcatgtgaaaagatatgtata |
7387492 |
T |
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| Q |
219 |
ttagagaatgcaattgatatgtttgaccaagtcaatcaccaatgacaagttcaagaag---ttgtgtctttcggttgtcatattgtaaatgtcgcgcaaa |
315 |
Q |
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| T |
7387491 |
ttagagaatgccattgatatgtttgaccaagtcaatcaccaatgataagttcaagaagaagttgtgtctttcggttgtcatattgtaaatgtcgcgcaaa |
7387392 |
T |
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| Q |
316 |
aaatcttcataagggtttgatattcgtcaatgtaaagattgttgagtatggcttatagatagtaatggaataagagacgagtgagaggagtgagctttgg |
415 |
Q |
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| T |
7387391 |
aaaatttcataagggtttgatattcgtcaatgtaaagattgttgaatatggctcatagatagtaatggaataagagacaagtgagaagagcgagctttgg |
7387292 |
T |
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| Q |
416 |
ccctac |
421 |
Q |
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| T |
7387291 |
ccctac |
7387286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 9726405 - 9726352
Alignment:
| Q |
219 |
ttagagaatgcaattgatatgtttgaccaagtcaatcaccaatgacaagttcaag |
273 |
Q |
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| T |
9726405 |
ttagagaatgcaactgatatgtt-gaccaagtcagtcatcagtgacaagttcaag |
9726352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 32492106 - 32492063
Alignment:
| Q |
229 |
caattgatatgtttgaccaagtcaatcaccaatgacaagttcaag |
273 |
Q |
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| T |
32492106 |
caattgatatgtt-gaccaagtcaatcacaaatgacaagttcaag |
32492063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 32985434 - 32985493
Alignment:
| Q |
76 |
attgggtgttgagcaagttggagttcaattacattgtgatagtaagagtgtcatttattt |
135 |
Q |
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| T |
32985434 |
attgggtgttgagcaaggtggagtctggttgcattgtgatagtcagagtgtcatttattt |
32985493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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