View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10961_high_2 (Length: 387)

Name: NF10961_high_2
Description: NF10961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10961_high_2
NF10961_high_2
[»] chr3 (8 HSPs)
chr3 (21-379)||(29821876-29822219)
chr3 (294-345)||(49333873-49333923)
chr3 (296-370)||(54653010-54653085)
chr3 (296-349)||(43102304-43102357)
chr3 (294-349)||(47807849-47807904)
chr3 (294-383)||(33149979-33150069)
chr3 (294-339)||(12992033-12992077)
chr3 (294-339)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (151-293)||(40880222-40880364)
chr5 (294-349)||(1663507-1663562)
chr5 (294-343)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (296-375)||(118777-118856)
chr8 (294-349)||(5777111-5777166)
chr8 (294-339)||(45436181-45436225)
chr8 (305-349)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (342-386)||(24546535-24546579)
chr6 (20-53)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (296-370)||(3978364-3978439)
chr1 (294-339)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (294-370)||(38407199-38407275)
chr7 (296-349)||(19279339-19279392)
chr7 (294-343)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (294-370)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (296-370)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 379
Target Start/End: Original strand, 29821876 - 29822219
Alignment:
Q  21 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtttagaattatgtagtttag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  29821876 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtt---------------tag 29821960  T
Q  121 taactgctattttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggcc 220  Q
    ||||| | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  29821961 taactaccattttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatcatgaagaaaatattcagaaaaacttccagcc 29822060  T
Q  221 ttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatcatgttgttgttgaaattgagattggggt 320  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  29822061 ttcctttcttttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatctatcatattgttgttgaaattgagattggggt 29822160  T
Q  321 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822161 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 345  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  296 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 370  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  296 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 349  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 349  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 33150069 - 33149979
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttg 383  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| |||||||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttg 33149979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 339  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 339  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 40880364 - 40880222
Alignment:
Q  151 atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatccctt 250  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||    
T  40880364 atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttctttaggagactcatccctt 40880265  T
Q  251 ctcgaattggaataatcactacttctctaacaatcatttatca 293  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  40880264 ctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 349  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 343  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  296 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 375  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 349  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 339  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  305 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 349  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  342 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 386  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 4030718 - 4030751
Alignment:
Q  20 gacatcatcaaaattatatatgttaaatagttta 53  Q
    |||||||||||||||||| |||||||||||||||    
T  4030718 gacatcatcaaaattatacatgttaaatagttta 4030751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  296 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 370  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 339  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 370  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  296 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 349  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 343  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  294 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 370  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  296 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 370  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University