View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10961_high_5 (Length: 350)

Name: NF10961_high_5
Description: NF10961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10961_high_5
NF10961_high_5
[»] chr3 (2 HSPs)
chr3 (138-330)||(13219260-13219452)
chr3 (271-330)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (138-326)||(238257-238445)
scaffold0002 (259-326)||(240602-240669)
[»] chr4 (1 HSPs)
chr4 (235-330)||(18176963-18177058)
[»] chr5 (1 HSPs)
chr5 (271-330)||(39047942-39048001)
[»] chr7 (1 HSPs)
chr7 (239-327)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (271-330)||(15664-15723)
[»] chr1 (1 HSPs)
chr1 (285-330)||(39386263-39386308)
[»] chr2 (2 HSPs)
chr2 (138-169)||(10996334-10996365)
chr2 (2-34)||(20248673-20248705)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 138 - 330
Target Start/End: Complemental strand, 13219452 - 13219260
Alignment:
Q  138 tagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttct 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13219452 tagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgcttct 13219353  T
Q  238 aaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 330  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219352 aaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 13219260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  271 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 330  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 138 - 326
Target Start/End: Original strand, 238257 - 238445
Alignment:
Q  138 tagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttct 237  Q
    ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||    
T  238257 tagagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttct 238356  T
Q  238 aaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 326  Q
    ||||  ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  238357 aaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg 238445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  259 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 326  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  235 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 330  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  271 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 330  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  239 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 327  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  271 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 330  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  285 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 330  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 169
Target Start/End: Complemental strand, 10996365 - 10996334
Alignment:
Q  138 tagagcaaggcctaattgaaaatgaattgaat 169  Q
    ||||||||||||||||||||||||||||||||    
T  10996365 tagagcaaggcctaattgaaaatgaattgaat 10996334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 20248705 - 20248673
Alignment:
Q  2 agaaggatggtgtatccagaagaaaaggtagac 34  Q
    |||||||||||||||||||| ||||||||||||    
T  20248705 agaaggatggtgtatccagaggaaaaggtagac 20248673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University