View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10961_high_8 (Length: 320)

Name: NF10961_high_8
Description: NF10961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10961_high_8
NF10961_high_8
[»] chr6 (3 HSPs)
chr6 (117-172)||(24414328-24414383)
chr6 (168-210)||(1759099-1759141)
chr6 (190-229)||(31038975-31039014)
[»] chr7 (1 HSPs)
chr7 (90-151)||(439887-439948)
[»] chr5 (1 HSPs)
chr5 (160-230)||(31184231-31184299)
[»] chr8 (1 HSPs)
chr8 (167-204)||(14983485-14983522)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 24414328 - 24414383
Alignment:
Q  117 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattcttcactaacaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24414328 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaa 24414383  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
Q  168 aacaaacacactaacatttcaattctaaaacctaacattacaa 210  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  1759141 aacaaatacactaacatttcaatcctaaaacctaacattacaa 1759099  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
Q  190 ttctaaaacctaacattacaagtattcaattaaaaattca 229  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31039014 ttctaaaacctaacattacaagtattcaattttaaattca 31038975  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 439887 - 439948
Alignment:
Q  90 tcacactgctttctctcttttagcttctcaaaccgatacaattaatagatggaaggaagaaa 151  Q
    |||||||  ||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  439887 tcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaa 439948  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
Q  160 tcttcactaacaaacacactaacatttcaattctaaaacctaacattacaagtattcaattaaaaattcag 230  Q
    |||||| ||||||||| || ||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  31184299 tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag 31184231  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
Q  167 taacaaacacactaacatttcaattctaaaacctaaca 204  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14983485 taacaaacacactaacatttcaattttaaaacctaaca 14983522  T

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