View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10962_high_1 (Length: 613)
Name: NF10962_high_1
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10962_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Complemental strand, 4634581 - 4633998
Alignment:
| Q |
18 |
agtcctatatgttgaggtgtgttgatgaaggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatgataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4634581 |
agtcctatatgttgaggtgtgttgatgacggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatgataaa |
4634482 |
T |
|
| Q |
118 |
aatgggtttatgaaatacactattgataatagttcaatgtaaactgnnnnnnntttgagtaggcagattatacaaactaaattttgtcgacaagtagttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4634481 |
aatgggtttatgaaatacactattgataatagttcaatgtaaattgaaaaaaatttgagtaggcagattatacaaactaaattttgttgacaagtagttg |
4634382 |
T |
|
| Q |
218 |
tagatagtgatcctatgatagaggttgtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagttt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4634381 |
tagatagtgatcctatgatagaggtggtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagttt |
4634282 |
T |
|
| Q |
318 |
atctgtaattgtaaatttgtggtaaggcatttattgtcatttttgcaggttatttgaaatgtaaagtgcatacaaggattggttatagcaagtgaagaag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4634281 |
atctgtaattgtaaatttgtggtaaggcatttattgtcatttttgcaggttatttgaaatgtaaagtgcatacaaggattggttatagcaagtgaagaag |
4634182 |
T |
|
| Q |
418 |
ctacaagttaaatacattgtgtaaagctggga---nnnnnnnnnngcttctgcttgctagagacaaagggtgtgtgatatattctactattgatgatttg |
514 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4634181 |
ctaaaagttaaatacat--tgtaaagctgggatttttttttttttgcttctgcttgctagaaacaaggggtgtgtgatatattctactattgatgatttg |
4634084 |
T |
|
| Q |
515 |
atgagca-tacaaattctactgtcatgttttgatgtaaacaattaggctaagtaccgctgccggctcaaaaaccatagttgatgtc |
599 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4634083 |
atgagcattacaaattctactgtcatgttttgatgtaaacaattaggctaagtagcgctgccggctcaaaaaccatagttgatgtc |
4633998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 177 - 598
Target Start/End: Complemental strand, 660741 - 660335
Alignment:
| Q |
177 |
taggcagattatacaaactaaattttgtcgacaagtagttgtagatagtgatcctatgatagaggttgtttgagtggcttggatttctgactatgctatt |
276 |
Q |
| |
|
|||| ||||||||| ||| ||||||||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
660741 |
taggaagattataccaaccaaattttgttgacaggtagttgtagatagtgatcctgtgata-aggtggtttgagtggcttggatttctgaatatgccatt |
660643 |
T |
|
| Q |
277 |
gggtaagagttcattttccagagattttaaatgttcagtttatctgtaattgtaaatttgtggtaaggcatttattgtcatttttgcaggttatttgaaa |
376 |
Q |
| |
|
||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| |
|
|
| T |
660642 |
gggtaagagtt----------agtttttaaatgctcaatttatctgtaattgtaaatttgtggtaaagcatttattgtcatttctgcaggttatcttaaa |
660553 |
T |
|
| Q |
377 |
tgtaaagtgcatacaaggattggttatagcaagtgaagaagctacaagttaaatacattgtgtaaagctgggannnnnnnnnngcttctgcttgctagag |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
660552 |
tgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagctaaatacattgt--aaagctgggatttttttt--gcttctgcttgctagag |
660457 |
T |
|
| Q |
477 |
acaaagggtgtgtgatatattctactattgatgatttgatgagcatacaaattctactgtcatgttttgatgtaaacaattaggctaagtaccgctgccg |
576 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
660456 |
acaaggggtgtatcatatattctactattgatgatttgatgagcatacaaattctactgtcatgttttgttgtaaacaattaggctaagtagcgctgccg |
660357 |
T |
|
| Q |
577 |
gctcaaaaaccatagttgatgt |
598 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
660356 |
gctcaaaaaccatggttgatgt |
660335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21838262 - 21838357
Alignment:
| Q |
18 |
agtcctatatgttgaggtgtgttgatgaaggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
21838262 |
agtcctatatgttgaggtgtgttgatgaaggaagaaatcaaaagtatattgtgagaattagagttgggtttgaatatgctttagttgagtttatga |
21838357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University