View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10962_high_2 (Length: 436)

Name: NF10962_high_2
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10962_high_2
NF10962_high_2
[»] chr3 (2 HSPs)
chr3 (11-420)||(48235636-48236045)
chr3 (80-295)||(50439335-50439550)
[»] chr1 (2 HSPs)
chr1 (15-313)||(3686562-3686860)
chr1 (81-295)||(1273956-1274170)
[»] chr2 (3 HSPs)
chr2 (83-154)||(45728271-45728342)
chr2 (210-331)||(42673868-42673989)
chr2 (86-127)||(42674072-42674113)
[»] chr8 (2 HSPs)
chr8 (210-317)||(6516733-6516840)
chr8 (90-130)||(6516920-6516960)
[»] scaffold0229 (1 HSPs)
scaffold0229 (81-203)||(56-178)


Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 48235636 - 48236045
Alignment:
Q  11 cataggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235636 cataggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatca 48235735  T
Q  111 atataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235736 atataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactt 48235835  T
Q  211 tgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235836 tgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgc 48235935  T
Q  311 aatctcagctgctattttgaaccttttttgccatgatagaggcttagagttatttttccgaaataatctatcttctaaggtaccgttttccatgtactca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235936 aatctcagctgctattttgaaccttttttgccatgatagaggcttagagttatttttccgaaataatctatcttctaaggtaccgttttccatgtactca 48236035  T
Q  411 tacaccaaac 420  Q
    ||||||||||    
T  48236036 tacaccaaac 48236045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 295
Target Start/End: Original strand, 50439335 - 50439550
Alignment:
Q  80 taacattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggagga 179  Q
    ||||||||||||||| |||||||| ||||| |||||||| |||||||| || | ||  ||||||  |||||| ||||| ||||| || ||||| || |||    
T  50439335 taacattcctgtttgctgatactcaggatctatataacagaatgttcctgctgttgccgtcatgcgatattgcgtcacactgtcggccacagatggcgga 50439434  T
Q  180 actaatcttgcgagaccgacatcagcgactttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggct 279  Q
    || | |||||| | ||| ||||||   | ||||   || || ||| |||||| ||| ||||||  |||||| | ||||| ||| || || || ||||| |    
T  50439435 acaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactataggttctggtt 50439534  T
Q  280 ttgtttggtgaaggaa 295  Q
    ||||||||||||||||    
T  50439535 ttgtttggtgaaggaa 50439550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 3686860 - 3686562
Alignment:
Q  15 ggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatcaatat 114  Q
    |||||| | |||||||| || || || | |||||||||||| ||||| ||||||||||||| ||||||  ||||||| | ||||||||| |||||||| |    
T  3686860 ggaggcttagctgtgataatttgaagaaacattatccctaaagaataaatatctgattttgttgttaattttcctgtattttgatactctggatcaatgt 3686761  T
Q  115 aacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactttgct 214  Q
    |||| ||||||||||| |||  |||||||| ||||||||| ||    |||||||||||||| || ||||||||||| | ||| ||||||   | ||||||    
T  3686760 aacataatgttccagctgcttcagtcatgtgatattgtgtgacagaatcagctacagaaggtggtactaatcttgctaaaccaacatcacttattttgct 3686661  T
Q  215 cacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgcaat 313  Q
     ||  ||||||||||||| | |||||| | |||||||||||||| ||| || ||||  ||||| |||||||||||||||||||||||||| ||||||||    
T  3686660 aacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaacaattgcttctggttttgtttggtgaaggaaaagaagtgctgttgcaat 3686562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 295
Target Start/End: Complemental strand, 1274170 - 1273956
Alignment:
Q  81 aacattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaa 180  Q
    ||||||||||| ||||| ||||| ||||| || ||||| |||||||| ||||| || |||||   ||||||||||||  |||| ||||| || || || |    
T  1274170 aacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatattgtgtcacattgtctgctactgatggcggta 1274071  T
Q  181 ctaatcttgcgagaccgacatcagcga-ctttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggct 279  Q
    ||| |||||| | ||| ||||||   | ||||||  ||||| ||   ||| | ||| ||||||| |||||||||||||| ||| || | |||||| || |    
T  1274070 ctagtcttgccaaaccaacatcactaatctttgc-gacgtagttgcggtcaagcaagatgtttgctggtttaaggtctctatgtactagtggctcaggtt 1273972  T
Q  280 ttgtttggtgaaggaa 295  Q
    |||||||||| |||||    
T  1273971 ttgtttggtggaggaa 1273956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 45728342 - 45728271
Alignment:
Q  83 cattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgt 154  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||| || |||||||    
T  45728342 cattcctgtttgctgatactcgggatcaatataacagaatgttcccgctgctgatgtcatgcaacattgtgt 45728271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 42673989 - 42673868
Alignment:
Q  210 ttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttg 309  Q
    ||||| ||||| ||| ||||||| | |||||||| |||||| || || |||||||| |  || ||||| ||||| |||||||||||||||||  | || |    
T  42673989 ttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcacaaccggttctggttttgtctggtgaaggaaaagaaggcctgtcg 42673890  T
Q  310 caatctcagctgctattttgaa 331  Q
    ||||||| | ||||||||||||    
T  42673889 caatctctgatgctattttgaa 42673868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 42674113 - 42674072
Alignment:
Q  86 tcctgtttgttgatactcgggatcaatataacaaaatgttcc 127  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  42674113 tcctgtttgttgatactccggatcaatataaaaaaatgttcc 42674072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 6516840 - 6516733
Alignment:
Q  210 ttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttg 309  Q
    ||||| ||||| ||||||||||| | |||||||  |||||| |  || ||||| || ||||| |||||||||| ||||||||||||||||||  |||| |    
T  6516840 ttgctaacgtagtttttgtctaagagaatgtttcctggtttcatatcacgatgtactattggatctggctttgattggtgaaggaaaagaaggccagtgg 6516741  T
Q  310 caatctca 317  Q
    ||||||||    
T  6516740 caatctca 6516733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 6516960 - 6516920
Alignment:
Q  90 gtttgttgatactcgggatcaatataacaaaatgttccagc 130  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  6516960 gtttgttgatactcaggatcaatgtagcaaaatgttccagc 6516920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 178 - 56
Alignment:
Q  81 aacattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaa 180  Q
    ||||||||||| ||||| ||||| ||||| || ||||| |||||||| ||||| || |||||   ||||||||||||  |||| ||||| || || || |    
T  178 aacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatattgtgtcacattgtctgctactgatggcggta 79  T
Q  181 ctaatcttgcgagaccgacatca 203  Q
    ||| |||||| | ||| ||||||    
T  78 ctagtcttgccaaaccaacatca 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University