View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10962_high_8 (Length: 293)
Name: NF10962_high_8
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10962_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 36048906 - 36049167
Alignment:
| Q |
14 |
agggcgagttagtagcggggcctactaaagtcgtggttccggttagaacaacaactaattacataagagtgaagaattcggccaagtgttgccactaaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36048906 |
agggcgagttagtagcggggcctactaaagtcgtggttccggttagaacaacaactaattacataagagtgaagaattcggccaagtgttgccactaaag |
36049005 |
T |
|
| Q |
114 |
agcagttgtaataattctgaattatttcgtgaataattagggtttatagtgttcactgatccctacattcgatcggtcctctcgccccttgcccctctaa |
213 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36049006 |
agcagttgtaat---tctgtattattttgtgaataattagggtttatagtgttcactgatccctacattcgatcggtcctctcgccccttgcccctctaa |
36049102 |
T |
|
| Q |
214 |
tatgcctatagccatactcaactgttcccccaccccaaatgctatcatatttgattcatatatac |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36049103 |
tatgcctatagccatactcaactgttcccccaccccaaatgctatcatatttgattcatatatac |
36049167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University