View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10962_low_3 (Length: 422)

Name: NF10962_low_3
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10962_low_3
NF10962_low_3
[»] chr5 (24 HSPs)
chr5 (1-409)||(39184211-39184619)
chr5 (28-409)||(24072290-24072670)
chr5 (214-409)||(7392055-7392250)
chr5 (212-412)||(31721538-31721737)
chr5 (215-306)||(27712939-27713030)
chr5 (212-409)||(8730777-8730974)
chr5 (224-404)||(17854096-17854278)
chr5 (216-290)||(22675456-22675530)
chr5 (337-409)||(7195263-7195335)
chr5 (241-404)||(13954263-13954425)
chr5 (364-409)||(34378110-34378155)
chr5 (25-110)||(8730602-8730687)
chr5 (364-409)||(33258906-33258951)
chr5 (225-409)||(14302454-14302638)
chr5 (30-110)||(22675623-22675703)
chr5 (367-398)||(12046270-12046301)
chr5 (367-409)||(21402861-21402903)
chr5 (364-409)||(22675348-22675393)
chr5 (364-409)||(23426356-23426401)
chr5 (364-409)||(25992019-25992064)
chr5 (223-295)||(698231-698303)
chr5 (364-404)||(698373-698413)
chr5 (223-295)||(18593113-18593185)
chr5 (369-409)||(18593260-18593300)
[»] chr1 (38 HSPs)
chr1 (29-409)||(17033263-17033643)
chr1 (222-406)||(42374033-42374217)
chr1 (178-409)||(38544762-38544990)
chr1 (187-409)||(50589231-50589450)
chr1 (215-409)||(19598506-19598693)
chr1 (225-405)||(24658803-24658982)
chr1 (243-405)||(46814495-46814656)
chr1 (187-409)||(16147391-16147612)
chr1 (364-409)||(31585784-31585829)
chr1 (364-409)||(41920464-41920509)
chr1 (337-409)||(9313313-9313385)
chr1 (367-409)||(24449954-24449996)
chr1 (339-409)||(46692843-46692913)
chr1 (32-114)||(50589524-50589606)
chr1 (223-404)||(7857525-7857705)
chr1 (364-409)||(24684502-24684547)
chr1 (364-404)||(5459173-5459213)
chr1 (337-409)||(6583240-6583312)
chr1 (333-409)||(46603373-46603449)
chr1 (364-407)||(15840938-15840981)
chr1 (256-303)||(27905348-27905395)
chr1 (364-406)||(4651792-4651834)
chr1 (371-409)||(5389445-5389483)
chr1 (371-409)||(27102210-27102248)
chr1 (364-409)||(27905424-27905469)
chr1 (364-409)||(30685928-30685973)
chr1 (337-409)||(32864585-32864657)
chr1 (339-407)||(34774858-34774925)
chr1 (30-93)||(19598333-19598396)
chr1 (364-407)||(30655572-30655615)
chr1 (364-407)||(33034672-33034715)
chr1 (241-291)||(6583333-6583383)
chr1 (225-275)||(10785490-10785540)
chr1 (252-301)||(9081638-9081687)
chr1 (364-397)||(27031876-27031909)
chr1 (28-80)||(4651483-4651535)
chr1 (252-300)||(9313422-9313470)
chr1 (367-407)||(36132758-36132798)
[»] chr7 (43 HSPs)
chr7 (178-406)||(11379154-11379379)
chr7 (212-409)||(13311698-13311896)
chr7 (222-412)||(46133299-46133488)
chr7 (215-301)||(47457147-47457233)
chr7 (208-409)||(6716760-6716961)
chr7 (225-408)||(8745026-8745209)
chr7 (212-406)||(38485418-38485610)
chr7 (337-409)||(1320779-1320851)
chr7 (365-409)||(10244195-10244239)
chr7 (222-409)||(16828960-16829147)
chr7 (226-409)||(16954527-16954710)
chr7 (364-410)||(9349761-9349807)
chr7 (363-401)||(17802848-17802886)
chr7 (364-405)||(6584921-6584962)
chr7 (364-409)||(9428129-9428174)
chr7 (280-409)||(24324822-24324951)
chr7 (364-405)||(34389974-34390015)
chr7 (364-409)||(38306273-38306318)
chr7 (337-409)||(3478337-3478409)
chr7 (40-400)||(9106852-9107211)
chr7 (337-404)||(42533281-42533348)
chr7 (28-110)||(12480577-12480659)
chr7 (367-409)||(12480901-12480943)
chr7 (333-407)||(22568138-22568212)
chr7 (364-398)||(46262154-46262188)
chr7 (364-409)||(33435121-33435166)
chr7 (364-404)||(25160827-25160867)
chr7 (223-299)||(34389833-34389909)
chr7 (364-404)||(35745856-35745896)
chr7 (223-295)||(37794870-37794942)
chr7 (337-409)||(37794974-37795046)
chr7 (337-389)||(44755611-44755663)
chr7 (364-407)||(25153232-25153275)
chr7 (364-407)||(48058680-48058723)
chr7 (367-405)||(3419684-3419722)
chr7 (367-409)||(3867131-3867173)
chr7 (364-398)||(27993571-27993605)
chr7 (364-398)||(35206728-35206762)
chr7 (365-402)||(2613898-2613935)
chr7 (41-110)||(29647556-29647625)
chr7 (364-405)||(41089776-41089817)
chr7 (364-405)||(47325913-47325954)
chr7 (370-402)||(17802975-17803007)
[»] chr4 (41 HSPs)
chr4 (212-409)||(46698809-46699005)
chr4 (187-409)||(12296011-12296232)
chr4 (240-409)||(53823445-53823614)
chr4 (188-409)||(35800328-35800546)
chr4 (215-306)||(21988046-21988137)
chr4 (216-409)||(38929698-38929884)
chr4 (225-409)||(22811184-22811367)
chr4 (212-301)||(50102395-50102484)
chr4 (227-290)||(28966749-28966812)
chr4 (343-409)||(21387228-21387294)
chr4 (232-301)||(6600078-6600147)
chr4 (225-409)||(25753045-25753229)
chr4 (256-404)||(39421042-39421190)
chr4 (364-402)||(31050693-31050731)
chr4 (364-409)||(8255039-8255084)
chr4 (364-409)||(8268457-8268502)
chr4 (364-401)||(53756768-53756805)
chr4 (372-407)||(2792300-2792335)
chr4 (242-301)||(19672991-19673050)
chr4 (364-407)||(39041300-39041343)
chr4 (339-405)||(16501718-16501784)
chr4 (364-398)||(40813816-40813850)
chr4 (364-409)||(4305737-4305782)
chr4 (187-300)||(31050794-31050906)
chr4 (364-409)||(38637256-38637301)
chr4 (337-409)||(2061762-2061834)
chr4 (241-301)||(19815356-19815416)
chr4 (233-305)||(21387330-21387402)
chr4 (364-396)||(37707392-37707424)
chr4 (367-397)||(26474851-26474881)
chr4 (364-406)||(36962642-36962684)
chr4 (364-409)||(6599969-6600014)
chr4 (28-93)||(38929520-38929585)
chr4 (376-409)||(41117991-41118024)
chr4 (49-110)||(46699095-46699156)
chr4 (364-409)||(49747539-49747584)
chr4 (376-404)||(16833050-16833078)
chr4 (369-409)||(30167588-30167628)
chr4 (365-409)||(30964454-30964498)
chr4 (375-407)||(32057136-32057168)
chr4 (339-407)||(48098320-48098388)
[»] chr6 (22 HSPs)
chr6 (212-409)||(33968637-33968834)
chr6 (223-409)||(32935363-32935549)
chr6 (187-409)||(12793951-12794172)
chr6 (215-297)||(13098699-13098781)
chr6 (337-409)||(20701827-20701899)
chr6 (233-320)||(15943900-15943987)
chr6 (185-299)||(9223876-9223988)
chr6 (339-409)||(26216043-26216112)
chr6 (339-409)||(26534743-26534813)
chr6 (225-393)||(3880623-3880791)
chr6 (337-409)||(3117478-3117550)
chr6 (367-407)||(34105428-34105468)
chr6 (243-409)||(16510325-16510492)
chr6 (222-300)||(15132655-15132733)
chr6 (364-401)||(7546461-7546498)
chr6 (364-409)||(9224053-9224098)
chr6 (364-407)||(34090375-34090418)
chr6 (364-403)||(34092807-34092846)
chr6 (343-401)||(20499910-20499968)
chr6 (28-110)||(26535026-26535108)
chr6 (28-113)||(9223717-9223801)
chr6 (366-407)||(21266127-21266168)
[»] chr3 (35 HSPs)
chr3 (231-409)||(5556449-5556627)
chr3 (195-407)||(30935416-30935627)
chr3 (233-407)||(823461-823635)
chr3 (214-322)||(27398820-27398928)
chr3 (225-301)||(47945585-47945661)
chr3 (212-281)||(1653040-1653108)
chr3 (364-409)||(17550969-17551014)
chr3 (364-409)||(19176514-19176559)
chr3 (241-297)||(4464071-4464127)
chr3 (338-408)||(14879421-14879491)
chr3 (225-409)||(14755289-14755471)
chr3 (364-409)||(43012387-43012432)
chr3 (364-404)||(34475783-34475823)
chr3 (366-409)||(2392530-2392573)
chr3 (366-409)||(2394277-2394320)
chr3 (212-283)||(25594669-25594740)
chr3 (364-411)||(30127274-30127321)
chr3 (364-407)||(47945718-47945761)
chr3 (364-398)||(20710743-20710777)
chr3 (367-409)||(37123397-37123439)
chr3 (367-409)||(39021300-39021342)
chr3 (369-407)||(45163872-45163910)
chr3 (364-409)||(9584077-9584122)
chr3 (364-409)||(33143973-33144018)
chr3 (32-80)||(823788-823836)
chr3 (337-409)||(14193925-14193997)
chr3 (364-407)||(19295891-19295934)
chr3 (370-409)||(20611801-20611840)
chr3 (364-407)||(24099353-24099396)
chr3 (364-403)||(40023602-40023641)
chr3 (28-110)||(1653208-1653290)
chr3 (223-300)||(23328482-23328557)
chr3 (344-409)||(1652910-1652975)
chr3 (225-398)||(25647557-25647730)
chr3 (364-397)||(45398808-45398841)
[»] scaffold1613 (1 HSPs)
scaffold1613 (178-409)||(1041-1269)
[»] chr2 (40 HSPs)
chr2 (178-409)||(4471752-4471980)
chr2 (225-409)||(22885157-22885340)
chr2 (222-348)||(3745230-3745356)
chr2 (224-397)||(15710579-15710752)
chr2 (212-409)||(25504933-25505130)
chr2 (224-397)||(15723042-15723217)
chr2 (214-412)||(18680928-18681125)
chr2 (216-304)||(15126532-15126620)
chr2 (337-409)||(1269468-1269540)
chr2 (178-409)||(29486959-29487187)
chr2 (214-407)||(10173604-10173798)
chr2 (226-306)||(2062782-2062862)
chr2 (337-409)||(13337259-13337331)
chr2 (223-405)||(7874163-7874344)
chr2 (222-412)||(31902435-31902624)
chr2 (187-405)||(14106552-14106769)
chr2 (338-396)||(41086825-41086883)
chr2 (364-405)||(14405210-14405251)
chr2 (364-409)||(39338889-39338934)
chr2 (187-256)||(40704028-40704096)
chr2 (364-404)||(10524109-10524149)
chr2 (233-293)||(30967262-30967322)
chr2 (28-114)||(22885450-22885537)
chr2 (364-398)||(4162055-4162089)
chr2 (187-253)||(16959863-16959928)
chr2 (364-409)||(15126434-15126479)
chr2 (32-93)||(16959710-16959771)
chr2 (364-409)||(16959994-16960039)
chr2 (223-300)||(17105282-17105359)
chr2 (25-110)||(25505220-25505305)
chr2 (364-409)||(33788656-33788701)
chr2 (241-390)||(37770684-37770833)
chr2 (233-301)||(15817520-15817588)
chr2 (225-301)||(23650258-23650334)
chr2 (364-400)||(23665437-23665473)
chr2 (364-407)||(34143079-34143122)
chr2 (364-409)||(387185-387230)
chr2 (364-405)||(2062901-2062942)
chr2 (364-409)||(23650397-23650442)
chr2 (367-407)||(915478-915518)
[»] scaffold0062 (3 HSPs)
scaffold0062 (224-409)||(46963-47150)
scaffold0062 (224-397)||(59491-59664)
scaffold0062 (224-397)||(71599-71774)
[»] scaffold0050 (1 HSPs)
scaffold0050 (187-409)||(36542-36764)
[»] chr8 (23 HSPs)
chr8 (272-409)||(30236152-30236289)
chr8 (224-397)||(18690303-18690477)
chr8 (215-411)||(35062321-35062516)
chr8 (212-417)||(10552130-10552333)
chr8 (225-306)||(17720831-17720912)
chr8 (225-409)||(15906559-15906743)
chr8 (364-409)||(24995419-24995464)
chr8 (364-409)||(31207386-31207431)
chr8 (225-409)||(10248577-10248761)
chr8 (367-409)||(17657026-17657068)
chr8 (364-409)||(9519511-9519556)
chr8 (364-405)||(15821407-15821448)
chr8 (372-409)||(16457485-16457522)
chr8 (364-405)||(32066323-32066364)
chr8 (364-409)||(34389029-34389074)
chr8 (364-409)||(36630849-36630894)
chr8 (364-409)||(37986882-37986927)
chr8 (364-409)||(41893424-41893469)
chr8 (364-396)||(33967338-33967370)
chr8 (339-409)||(32945727-32945797)
chr8 (364-398)||(40531244-40531278)
chr8 (364-401)||(544382-544419)
chr8 (223-295)||(24995534-24995606)
[»] scaffold0200 (1 HSPs)
scaffold0200 (337-409)||(19368-19440)
[»] scaffold0119 (1 HSPs)
scaffold0119 (337-409)||(42162-42234)
[»] scaffold0063 (1 HSPs)
scaffold0063 (245-404)||(58020-58179)
[»] scaffold0620 (2 HSPs)
scaffold0620 (364-407)||(3842-3885)
scaffold0620 (364-403)||(8141-8180)
[»] scaffold0068 (2 HSPs)
scaffold0068 (364-404)||(35800-35840)
scaffold0068 (223-295)||(35911-35983)
[»] scaffold0499 (1 HSPs)
scaffold0499 (215-306)||(6429-6520)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 39184619 - 39184211
Alignment:
Q  1 tggtgttgatgtgtgatcgtggaggttgtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  39184619 tggtgttgatgtgtgatcgtggaggttgtggttgttgttggtgatttcttttggatgccacctcagttattcgggtccattttcggtgtcgctggctatt 39184520  T
Q  101 gtttgagtttggggctattaaggggttttagggtgttgtgagggtgtgttcttcaagctgagcannnnnnnnnnnnngattgatgttttgcaccaccgca 200  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||    
T  39184519 gttttagtttggggttgttaaggggttttagggtgttgtgagggtgtgttcttcaagctgagcattttttcctttttgattgatgttttgcaccaccgca 39184420  T
Q  201 aagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttg 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39184419 aagcatggtcgtctgtcttatttattgtgtgctggattctggtgggcaggttacttttgattcgagatcgggagttggcgtctagttgcaatcttgtttg 39184320  T
Q  301 gttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaa 400  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184319 gttggcgacagtgtttctctggtgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaa 39184220  T
Q  401 gtcagttct 409  Q
    |||||||||    
T  39184219 gtcagttct 39184211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 409
Target Start/End: Complemental strand, 24072670 - 24072290
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagtttggggctattaaggggtt 127  Q
    ||||||||||| ||||||||||||| || ||| |||||||||||||||||||| |||| |||||||  || |||||| ||||| ||| | |||||| |||    
T  24072670 gtggttgttgtgggtgatttcttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaagttttgggttgttaaggtgtt 24072571  T
Q  128 ttagggtgttgtgagggtg--tgttcttcaagctgagcannnnnnnnnnnnngattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttat 225  Q
    | |||||| | | ||||||  ||| |||| || ||||||             ||||||||||||  | ||||| ||| |||| || |||||||||  | |    
T  24072570 t-agggtgctttaagggtgcgtgtccttcgagttgagcattttttcctatttgattgatgttttt-atcaccgtaaatcatg-tcgtctgtcttacatgt 24072474  T
Q  226 tgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcga 325  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| || |||||||||||| | || || |||||||||| | |     
T  24072473 tgtgtgctggattctagtgggccggttacttttgcttcaagatcgggagttggcgtttagctgtaatcttgtttggatagctacagtgtttctctggtgg 24072374  T
Q  326 accgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||| |||||||||||||||||||||||| || |   ||||||| ||| |||| ||||||||| |||||||||||||||||||    
T  24072373 accgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttct 24072290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 409
Target Start/End: Complemental strand, 7392250 - 7392055
Alignment:
Q  214 tgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtg 313  Q
    ||||||| || ||||||| |||  |||| ||| ||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| | |    ||||    
T  7392250 tgtcttactttttgtgtgttggtatctgatggaccggttacttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggtg 7392151  T
Q  314 tttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||   | ||||| |||  ||||||||||||||||||| || |   ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  7392150 tttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttct 7392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 412
Target Start/End: Original strand, 31721538 - 31721737
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    ||||||||| |||||||||  ||||||||| ||||||||| | ||||| |||  |||||||||||||| |||||  ||| | ||||||||||||| |||     
T  31721538 tctgtcttacttattgtgttatggattctgatgggccggtca-ttttgcttcgcgatcgggagttggcttctagcggcattattgtttggttggctacga 31721636  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctct 411  Q
    ||||||||| | | ||||  |||  |||||||||||||||| || |  ||  ||||  |||||||||| |||||||||||||||||| ||||||||||||    
T  31721637 tgtttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttctct 31721736  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 27712939 - 27713030
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggc 306  Q
    |||||| || ||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||| |||| |||||||||||||||    
T  27712939 gtcttactttttgtgtgctggattctgatgggccggttacttttgcttcgaggtcgggagttggcgtctagatgcattcttgtttggttggc 27713030  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 409
Target Start/End: Original strand, 8730777 - 8730974
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||| | |||||| |||||| | | ||||  ||| | |||| ||||    
T  8730777 tctgtcttacttattgtgtgctggattctggtgggccgattacttttgcttcgagatcagaagttggtgtctagctactatctgattttgctggctacgg 8730876  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||| || | | | || || | |  ||||||||||| ||||||| || ||  ||||||||| || ||| ||||| |||||||||||| ||||||||||    
T  8730877 tgttcctatggtggactgaggataaggggtgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagttct 8730974  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 404
Target Start/End: Complemental strand, 17854278 - 17854096
Alignment:
Q  224 attgtgtgctggattctggtgggccggttactttt-gattcaagatcgggagttggcgtctagttgcaatcttgttt-ggttggcgacggtgtttctcta 321  Q
    |||||||||||||||||||||||||  |||||||| | ||  ||||||||||||||  ||||| | ||||||||||| || |||| | |||||| ||||     
T  17854278 attgtgtgctggattctggtgggccatttactttttgctttgagatcgggagttggtctctagctacaatcttgttttggctggctagggtgttcctctg 17854179  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    | | ||||  |||  ||||||||||||| ||||| || ||  || ||||||||||| | ||||||| |||||||||| |||||    
T  17854178 gtggaccgggggtgaggggtgcccttctaatttggtcttgaagtatggtgggccgaccgcttttgactcgagatcgggagtca 17854096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 22675530 - 22675456
Alignment:
Q  216 tcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgca 290  Q
    ||||| || ||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||    
T  22675530 tcttactttttgtgtgttggattctggtgggccggttacttttgcttcgagaccgggagttggcgtctagctgca 22675456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 7195335 - 7195263
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||  |||   |||||||| |||||||||||||||||||||||||| ||||||||||    
T  7195335 ggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttct 7195263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 404
Target Start/End: Complemental strand, 13954425 - 13954263
Alignment:
Q  241 ggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttgggg 340  Q
    ||||||||||||||||||| ||| |||||  |||| || |||||| ||||||||| ||||  | |     |||||||||| | | ||||| |||  ||||    
T  13954425 ggtgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatcttatttgacttgattttgtgtttctctggtgtaccgaaggtgagggg 13954326  T
Q  341 tgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    |||| |||||||||| || |   ||||||||||||||||||||||||||||||||||| |||||    
T  13954325 tgcc-ttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 13954263  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 34378110 - 34378155
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  34378110 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 34378155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 8730602 - 8730687
Alignment:
Q  25 gttgtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    |||||||||||||| |||||| ||||||||| |    ||||||| |||||||||||||||| || ||||  || ||||||||||||    
T  8730602 gttgtggttgttgtgggtgatgtcttttggaggttgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttt 8730687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 33258951 - 33258906
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttct 33258906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 14302638 - 14302454
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||||||| |||||| || || |||||||||| ||| |||||||||||  | |||||| ||||| || ||||||   |    ||||||||||| | |    
T  14302638 ttgtgtgctggtttctgggggccccgttacttttgcttcgagatcgggagtccgtgtctagctgcaagctagtttggcgtgatctggtgtttctctggtg 14302539  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     | ||| |||  ||| |||||||||| |||| || |   ||||||||| | ||||||||||| |||||||| || ||||||||||    
T  14302538 tatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttct 14302454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 22675703 - 22675623
Alignment:
Q  30 ggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    ||||||||| ||||| | ||||||||  ||||||||||||||||||||| | |||| |||||||  || || |||||||||    
T  22675703 ggttgttgtgggtgactccttttggaaaccacctctgttattcgggtccttattcgttgtcgctacctcttctttgagttt 22675623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 398
Target Start/End: Original strand, 12046270 - 12046301
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcgg 398  Q
    ||||||||||||||||||||||||||||||||    
T  12046270 tggtgggccgatcacttttgattcgagatcgg 12046301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 21402903 - 21402861
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||  ||||||||||| ||||||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttct 21402861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 22675393 - 22675348
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  22675393 gtctggtggaccgatcgattttgattcgagatcgggagtcagttct 22675348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 23426356 - 23426401
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||| |||| ||||||||||||||||| || ||||||||||    
T  23426356 gtctggtggaccgaacacttttgattcgagattgggagtcagttct 23426401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 25992019 - 25992064
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||| ||| |||||||||||||||||  ||||||||||    
T  25992019 gtctggtgggccaatcgcttttgattcgagatcgagagtcagttct 25992064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 698231 - 698303
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatctt 295  Q
    ||||||||||||| || | |||||||||||  ||| | ||| |||||||||||  | ||||||||||||||||    
T  698231 tattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctt 698303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 698373 - 698413
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  698373 gtctggtggaccgatctcttttgattcgagatcgggagtca 698413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 18593113 - 18593185
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatctt 295  Q
    ||||||||||||  ||  ||||||||||||  ||| | ||| ||||||||||| || ||||||||||||||||    
T  18593113 tattgtgtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctt 18593185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 18593260 - 18593300
Alignment:
Q  369 gtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||| ||||||||||||||||||||||| ||| ||||||    
T  18593260 gtgggcagatcacttttgattcgagatcgggagttagttct 18593300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 29 - 409
Target Start/End: Original strand, 17033263 - 17033643
Alignment:
Q  29 tggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagtttggggctattaaggggttt 128  Q
    |||||||||| |||||||||||||||| ||  ||| ||||||| |||||||||||||  |||| || ||||||||||||||| ||| |||| ||| |||     
T  17033263 tggttgttgtgggtgatttcttttggaggcggcctatgttatttgggtccattttcgtcgtcgttggctattgtttgagttttgggttattgaggtgtta 17033362  T
Q  129 tagggtgttgtgagggtgt--gttcttcaagctgagcannnnnnnnnnnnngattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttatt 226  Q
    || |||||| |||||||||  || |||| |||||||||             ||||||||||| |||||||| |||| | || || | ||||||| |||||    
T  17033363 tatggtgttttgagggtgtatgtccttcgagctgagcattttttcctttttgattgatgttt-gcaccaccacaaatcttg-tcgtttgtcttacttatt 17033460  T
Q  227 gtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaa 326  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||| || | |||||| |||| | | |||    
T  17033461 gtgtgctggattctggtgggccggttacttttgtttcgagatcgagaattggcgtctagttgcaatcttgtttggctgactacggtgattctatggtgaa 17033560  T
Q  327 ccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||  ||  ||||||||||||||||||| || | | |||||||||||||||||||||||| |||||||||| ||||||||||    
T  17033561 ccgagagtagggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttct 17033643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 222 - 406
Target Start/End: Original strand, 42374033 - 42374217
Alignment:
Q  222 ttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    |||||||||| || |||||||||| ||||||||||||||||| |||||||||||  | |||||||||||||||||||||| || ||||  ||||||| |     
T  42374033 ttattgtgtgttgtattctggtggaccggttacttttgattcgagatcgggagtcagtgtctagttgcaatcttgtttggctgacgacaatgtttctttg 42374132  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagt 406  Q
    | | ||||| |||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||| |||||||| |||||||    
T  42374133 gtgtaccgagggtttggggtgcccttctgatttggtcatgttgtctggtggaccgatcgcttttgatttgagatcgggagtcagt 42374217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 409
Target Start/End: Complemental strand, 38544990 - 38544762
Alignment:
Q  178 gattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttg 277  Q
    ||||||||||| ||||||||||||| |||| || | |||||||  |||||||||||||||||| |||||||| ||||||||| ||| |||| ||||||||    
T  38544990 gattgatgttt-gcaccaccgcaaatcatg-tcgtttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttg 38544893  T
Q  278 gcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccga 377  Q
    | |||||| |||||||||||||| |||     ||||||||||| | | || |    |  ||||| ||||||||||||| |||||  ||||||||||||||    
T  38544892 gtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccga 38544794  T
Q  378 tcacttttgattcgagatcggaagtcagttct 409  Q
    || |||||||||||||||||| ||||||||||    
T  38544793 tcgcttttgattcgagatcgggagtcagttct 38544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 409
Target Start/End: Complemental strand, 50589450 - 50589231
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagt 286  Q
    |||||||||||||||| |||| |  | |||||||  ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||     
T  50589450 tttgcaccaccgcaaatcatgttg-tatgtcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcgggacttggcgtctagc 50589352  T
Q  287 tgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttg 386  Q
    |||  |||||||||| |||| |||  |||||||| | | || |  |||  ||||||||| |||| || | || ||  ||| ||||||| |||| ||||||    
T  50589351 tgctttcttgtttggctggctacg--gtttctctggtggactgggggtaaggggtgcccgtctggttgggtcctgaagtccggtgggctgatcgcttttg 50589254  T
Q  387 attcgagatcggaagtcagttct 409  Q
    |||||| ||||| || |||||||    
T  50589253 attcgaaatcgggagccagttct 50589231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 409
Target Start/End: Original strand, 19598506 - 19598693
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgt 314  Q
    |||||| || |||||||||||| |||||||||||||||||||||| ||| ||||| | ||||||||||||| |||| | ||| |||| || |            
T  19598506 gtcttactttttgtgtgctggactctggtgggccggttacttttgcttcgagatcagaagttggcgtctagctgcatttttgcttggctgac-------a 19598598  T
Q  315 ttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||| | | ||||| |||  ||||||||| |||| || | || ||  |||||||||||||||| |||||||||||||||||  ||||||||||    
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttct 19598693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 405
Target Start/End: Original strand, 24658803 - 24658982
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    |||||||||||| || ||||||||||||| ||||| |||||||||||||||||| |||||| ||||||| ||||||  | |  | |||| |||||| | |    
T  24658803 ttgtgtgctggagtccggtgggccggttatttttgcttcaagatcgggagttggtgtctagctgcaatcatgtttgacttgatatggtg-ttctctggtg 24658901  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
     | ||  ||   |||||||||| |||||||| |  |   |||||||||||| |||||||||||||||||||||| ||||||    
T  24658902 tatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcag 24658982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 405
Target Start/End: Complemental strand, 46814656 - 46814495
Alignment:
Q  243 tgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtg 342  Q
    ||||||||||| ||||||||| |||||| ||||||| |||||||||||||| ||||||  | |  | |||||| |||| | | ||||  ||   ||||||    
T  46814656 tgggccggttatttttgattcgagatcgagagttggtgtctagttgcaatcctgtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggtg 46814558  T
Q  343 cccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    |||| |||||||| |  |   ||||||||||||||||||||||||||||||||||| ||||||    
T  46814557 ccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 46814495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 16147391 - 16147612
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagt 286  Q
    |||||||||||||| | |||| |||| ||||||| |||||||||| | | ||| ||||||||| ||||||||  ||| |||||||||||    ||||||     
T  16147391 tttgcaccaccgcatatcatg-tcatttgtcttacttattgtgtgttaggttccggtgggccgattacttttagttcgagatcgggagtcactgtctagc 16147489  T
Q  287 tgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttg 386  Q
    ||||||||||||||| | |    ||||||||||||||| ||||  |||  | ||| |||||||| |||| || |   || ||||||| |||| | |||||    
T  16147490 tgcaatcttgtttggcttgatttggtgtttctctagcgtaccgggggtgagaggttcccttctgttttggtcgttaagtatggtgggacgatgaattttg 16147589  T
Q  387 attcgagatcggaagtcagttct 409  Q
    |||| | ||||| ||||||||||    
T  16147590 attcaatatcgggagtcagttct 16147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 31585829 - 31585784
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  31585829 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 31585784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 41920464 - 41920509
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  41920464 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 41920509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 9313385 - 9313313
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||| || |   |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  9313385 ggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttct 9313313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 24449996 - 24449954
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  24449996 tggtgggccgatcacttttgatttgagatcggaagtcagttct 24449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 46692913 - 46692843
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||| || ||||| | || | ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  46692913 ggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttagttct 46692843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 50589606 - 50589524
Alignment:
Q  32 ttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagtttgggg 114  Q
    ||||||| ||||||| |||||||| ||| |||||||||||||||||||| |||  |||||||| || ||| |||||||| |||    
T  50589606 ttgttgtgggtgattccttttggaggccgcctctgttattcgggtccatattccttgtcgctgcctcttgcttgagttttggg 50589524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 404
Target Start/End: Original strand, 7857525 - 7857705
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctag 322  Q
    ||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||||||| |||||||||||||  ||||||  | |  | | |||| |||| |    
T  7857525 tattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaattatgtttgacttgatatgttgtt-ctctgg 7857623  T
Q  323 cgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
     | || |  ||   |||||||||| |||||||| |  |   ||||||||||||||||||||||||||||||||||| |||||    
T  7857624 tgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 7857705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 24684547 - 24684502
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  24684547 gtctggtgggccgatcacttttaattcgagatcggatgtcagttct 24684502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 5459173 - 5459213
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  5459173 gtctggtgggccgatcacttttgattcgagatcgggagtca 5459213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 6583312 - 6583240
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||| |||||||||| || |   ||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  6583312 ggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattct 6583240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 46603373 - 46603449
Alignment:
Q  333 gtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||| |||||| |||||| | |||||| ||||||||||||  || |||||||||||||||||  ||||||||||    
T  46603373 gtttgggatgccctcctgattaggtcatgtagtctggtgggccattcgcttttgattcgagatcgagagtcagttct 46603449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 15840981 - 15840938
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  15840981 gtctggtgggctgatcacttttgattcgagatcgggagtcagtt 15840938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 27905348 - 27905395
Alignment:
Q  256 tttgattcaagatcgggagttggcgtctagttgcaatcttgtttggtt 303  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  27905348 tttgattcgagaccgggagttggtgtctagttgcaatcttgtttggtt 27905395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 4651792 - 4651834
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagt 406  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  4651792 gtctggggggccgatcacttttgattcgagatcgggagtcagt 4651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 5389483 - 5389445
Alignment:
Q  371 gggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  5389483 gggccgatcacttttgattcgagatcgggagtcagttct 5389445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 27102210 - 27102248
Alignment:
Q  371 gggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttct 27102248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 27905424 - 27905469
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  27905424 gtctggtggaccgatcacttttgattcgagatcagaagttagttct 27905469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 30685973 - 30685928
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||    
T  30685973 gtcttgtgggccgatcacttttgatttgagatcgggagtcagttct 30685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 32864657 - 32864585
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||| |||||| || |   | |||||||||| ||||||||| ||||||||||||||||| |||||    
T  32864657 ggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttct 32864585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 34774858 - 34774925
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||||| || |   ||||||||| |||||||||||||| |||||||||| ||||||||    
T  34774858 ggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtt 34774925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 19598333 - 19598396
Alignment:
Q  30 ggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgct 93  Q
    ||||||||| ||||||| ||||||||  || |||||||||||| ||||||| |||| |||||||    
T  19598333 ggttgttgtgggtgattccttttggagaccgcctctgttattcaggtccatattcgttgtcgct 19598396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 30655572 - 30655615
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||    
T  30655572 gtctagtgggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 33034715 - 33034672
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  33034715 gtctggtgggtcgatcacttctgattcgagatcgaaagtcagtt 33034672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 6583383 - 6583333
Alignment:
Q  241 ggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaa 291  Q
    ||||||||||||||||||| ||| ||||||||||| || |||||| |||||    
T  6583383 ggtgggccggttacttttgcttcgagatcgggagtcggtgtctagctgcaa 6583333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 10785540 - 10785490
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagt 275  Q
    ||||||||||| ||| ||||||||||||| ||||| ||| |||||||||||    
T  10785540 ttgtgtgctggtttccggtgggccggttaattttgcttcgagatcgggagt 10785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 9081687 - 9081638
Alignment:
Q  252 tacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||||||||| |||||||||||| | ||||||||||||  ||||||||    
T  9081687 tacttttgattcgagatcgggagttagtgtctagttgcaaatttgtttgg 9081638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 27031909 - 27031876
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcg 397  Q
    |||| |||||||||||||||||||||||||||||    
T  27031909 gtctagtgggccgatcacttttgattcgagatcg 27031876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 4651483 - 4651535
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccat 80  Q
    |||| |||||| |||||||||| || || ||| ||||||||||||||||||||    
T  4651483 gtggctgttgtgggtgatttctatttgaagccgcctctgttattcgggtccat 4651535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 9313470 - 9313422
Alignment:
Q  252 tacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttg 300  Q
    |||||||| ||| |||||||||||||| |||||| |||||| |||||||    
T  9313470 tacttttgcttcgagatcgggagttggtgtctagctgcaattttgtttg 9313422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 36132798 - 36132758
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  36132798 tggtgggtcgatcgcttttgatttgagatcggaagtcagtt 36132758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 406
Target Start/End: Complemental strand, 11379379 - 11379154
Alignment:
Q  178 gattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttg 277  Q
    ||||||||||| ||||||| ||||| |||| | |||||||| |||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  11379379 gattgatgttt-gcaccactgcaaaacatgtt-atctgtctcattt-ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttg 11379283  T
Q  278 gcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccga 377  Q
    | |||||| | ||||||||||||| || | ||||||||||||| | | ||||| |||||||||||||||||| ||||| |||||| |||||||| |||||    
T  11379282 gtgtctagctacaatcttgtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccga 11379183  T
Q  378 tcacttttgattcgagatcggaagtcagt 406  Q
    || |||||||||||||||||| |||||||    
T  11379182 tcgcttttgattcgagatcgggagtcagt 11379154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 212 - 409
Target Start/End: Original strand, 13311698 - 13311896
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggt-tggcgacg 310  Q
    |||||||||  | |||||||||||||||||||||||||  |||||||  ||| |||||||||||||| |||||  |||| |||| ||| |  || |  ||    
T  13311698 tctgtcttacattttgtgtgctggattctggtgggccgagtacttttccttcgagatcgggagttggtgtctaactgcattcttattttgactgacttcg 13311797  T
Q  311 gtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     ||||||||| | | ||||  | |  ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13311798 ttgtttctctggtggaccggggataaggggtgcccgtctggtttggtcatgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 13311896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 412
Target Start/End: Complemental strand, 46133488 - 46133299
Alignment:
Q  222 ttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    |||| ||||||||||||||| |||||| || | ||||| ||  |||||||||||||| || || | ||| | |||||||||||||  ||||||||||||     
T  46133488 ttatagtgtgctggattctgatgggccagtca-ttttgctttgagatcgggagttggagtttaatggcattattgtttggttggcttcggtgtttctctg 46133390  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctctg 412  Q
    | | ||||  |||| || |||||||||||||||| |  ||  |||||||| ||||||| ||||||||| |||||||| |||||||||||||    
T  46133389 gtggaccggaggttaggagtgcccttctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctg 46133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 47457233 - 47457147
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||| ||||||||||    
T  47457233 gtcttactttttgtgtgctggattctggtgggccggatacttttgattcgagatcgggagttggcgtctggctgcattcttgtttgg 47457147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 409
Target Start/End: Complemental strand, 6716961 - 6716760
Alignment:
Q  208 gtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcg 307  Q
    ||||| ||||||| || ||| ||||||| ||  |||||||| |||||||||  ||  ||||||||||| || |||||| ||||||||| ||||| | |      
T  6716961 gtcatttgtcttactttttgcgtgctggttttcggtgggccagttacttttactttgagatcgggagtcggtgtctagctgcaatcttatttggcttgat 6716862  T
Q  308 acggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
      | ||||||||| | | |||||  ||  |||||||||||||||||| |||||   ||||||| ||||||||||||||||||||||||||| ||||||||    
T  6716861 ttgatgtttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagtt 6716762  T
Q  408 ct 409  Q
    ||    
T  6716761 ct 6716760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 408
Target Start/End: Original strand, 8745026 - 8745209
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||||||| ||  ||||||||||||||||||| ||| ||||||| ||  || |||||| |||||| |||||||||  |    ||||||||||| | |    
T  8745026 ttgtgtgctggttttcggtgggccggttacttttgcttcgagatcggaaggcggtgtctagctgcaatgttgtttggtgtgatctggtgtttctctggtg 8745125  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttc 408  Q
     ||||| |||  |||||| |||||||||||| || |    |||||||||||||||||||||||||||||||||| | |||||||    
T  8745126 caccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttc 8745209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 406
Target Start/End: Original strand, 38485418 - 38485610
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    ||||||||| ||||||||||||||||| || ||||||| | | ||||| ||| || |||| ||||| | |||||  ||| | ||||||||||||| |  |    
T  38485418 tctgtcttacttattgtgtgctggattttgatgggccgatca-ttttgcttcgagttcgg-agttgacatctagcggcattattgtttggttggctatag 38485515  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctga-tttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagt 406  Q
    ||||||||| | | || |  |||  ||||||||||||||| |||| || ||  ||||||||||||||||||||||||||||||||||| |||||||    
T  38485516 tgtttctctggtggactgggggtaaggggtgcccttctgaatttgttc-tgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 1320779 - 1320851
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||| ||||||| ||||   ||||||||||||||||||||||||||| | ||||||||||||||||    
T  1320779 ggggtgcccttttgatttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttct 1320851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 10244195 - 10244239
Alignment:
Q  365 tctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  10244195 tctggtgggccgatcacttttgattcgagatcgggagtcagttct 10244239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 409
Target Start/End: Complemental strand, 16829147 - 16828960
Alignment:
Q  222 ttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    |||||||||||||| ||| | |||| || ||||||||| ||| |||| | ||||||| |||||  |||||||||| ||||   |    ||||||||||||    
T  16829147 ttattgtgtgctggtttccgatgggtcgattacttttgcttccagattgagagttggtgtctacctgcaatcttggttggcgcgatttggtgtttctcta 16829048  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    | | | |   |||  ||||||||||||||||||| || |   ||||||| ||| ||||||||||| |||||||||| |||||||||||    
T  16829047 gtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttct 16828960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 409
Target Start/End: Original strand, 16954527 - 16954710
Alignment:
Q  226 tgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcga 325  Q
    |||||||||| ||| | ||||||| ||||||||| ||| |||||| ||||||| |||||| |||||||||| ||||   |    ||| ||||||| | |     
T  16954527 tgtgtgctggtttccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttggcgcgatttggtctttctctggtgt 16954626  T
Q  326 accgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    | |   |||  ||||||||||||||||||| || |   ||||||| | ||||||||||||| |||||||||| |||||||||||    
T  16954627 atcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttct 16954710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 9349761 - 9349807
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctc 410  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  9349761 gtctggtgggccgatcacttttgattcgagatcgggagtcaattctc 9349807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 17802886 - 17802848
Alignment:
Q  363 ggtctggtgggccgatcacttttgattcgagatcggaag 401  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17802886 ggtctggtgggccgatcacttttgattcgagatcggaag 17802848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 6584921 - 6584962
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  6584921 gtctggtgggccgatcacttttgattcgagatcgggagtcag 6584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 9428174 - 9428129
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||    
T  9428174 gtctggtgagccgatcacttttgattcgagatcagaagtcagttct 9428129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 24324951 - 24324822
Alignment:
Q  280 gtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatc 379  Q
    |||||||||||||||||||||||  |    ||||||||| | | | ||||  | || ||||||||||||||||||| || |   || |||||||||||||    
T  24324951 gtctagttgcaatcttgtttggtgtgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatc 24324852  T
Q  380 acttttgattcgagatcggaagtcagttct 409  Q
    | ||||||||||||||||| ||||| ||||    
T  24324851 aattttgattcgagatcgggagtcaattct 24324822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 34389974 - 34390015
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  34389974 gtctggtgggccgatcacttttgattcgagatcgggagtcag 34390015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 38306273 - 38306318
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  38306273 gtctggtgggccgatcacttttgattcgagattgggagtcagttct 38306318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 3478337 - 3478409
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||| |||| || |   || |||||||||||||||||||||||||||||||| ||| ||||||    
T  3478337 ggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttct 3478409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 400
Target Start/End: Original strand, 9106852 - 9107211
Alignment:
Q  40 ggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagtttggggctattaaggggttttagggtgttgt 139  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||||  ||||||  || ||||||||||||  || | |||||| | ||||||||| | |    
T  9106852 ggtgatttcttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgagttttagggtgttaaggtg-tttagggtgcttt 9106950  T
Q  140 gagggt--gtgttcttcaagctgagcannnnnnnnnnnnngattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggat 237  Q
    ||||||  |||| |||| || |||| |             |||||||| ||||||||||| |||| ||| || || ||| |||  |||||||||||||||    
T  9106951 gagggtgggtgtccttccagatgagaattttttcctttttgattgatg-tttgcaccaccacaaatcat-gtgatttgtgttacatattgtgtgctggat 9107048  T
Q  238 tctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttg 337  Q
    | ||||||||   | ||||||| ||| |||| || |||||| |||||| | ||||||||||||  |||| | ||||||||| | | | |||   |||       
T  9107049 tttggtgggctaatcacttttgcttcgagattggtagttggagtctagctacaatcttgtttgcctggctatggtgtttctttggtggaccaggggtgat 9107148  T
Q  338 gggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaa 400  Q
    |||| ||| | | ||||| |||||  |||||||||| ||||| |||||||||||| |||||||    
T  9107149 gggttcccgtatcatttggtcatgaagtctggtgggacgatctcttttgattcgacatcggaa 9107211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 42533348 - 42533281
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    |||||||||| |||||||| || |   ||||||||||| ||||||||||||||||||||||| |||||    
T  42533348 ggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtca 42533281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 12480577 - 12480659
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    |||||||||||  ||||||||||||||| ||| ||| |||||||||||||||| | || ||| ||| ||| ||||||| ||||    
T  12480577 gtggttgttgtgagtgatttcttttggaggccgcctttgttattcgggtccatatccgttgttgcttactcttgtttgtgttt 12480659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 12480901 - 12480943
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagttct 12480943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 22568212 - 22568138
Alignment:
Q  333 gtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||| ||||||||||| ||||||||| |||| || | ||| ||||||||||| |||||| ||| ||||    
T  22568212 gtttggggtgctcttctgatttggtcatgtggtttggtaggtcaatcgcttttgattcgtgatcgggagttagtt 22568138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 46262188 - 46262154
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    |||||||||||||||||||||||||||||||||||    
T  46262188 gtctggtgggccgatcacttttgattcgagatcgg 46262154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 33435121 - 33435166
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||    
T  33435121 gtctggtgagacgatcacttttgattcgagatcgggagtcagttct 33435166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 25160827 - 25160867
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  25160827 gtctggtggaccgattacttttgattcgagatcggaagtca 25160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 34389833 - 34389909
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgttt 299  Q
    |||||||||||||  |||| |||||| |||| ||||| ||| ||||| | |||||| |||||||||||||| |||||    
T  34389833 tattgtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttt 34389909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 35745896 - 35745856
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  35745896 gtctgatgggctgatcacttttgattcgagatcggaagtca 35745856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 37794870 - 37794942
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatctt 295  Q
    ||||||||||||| ||  ||||||||||||  ||| | ||| |||||||||||||| |||||| |||||||||    
T  37794870 tattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctt 37794942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 37794974 - 37795046
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||| || ||||| | || | || |||||||||| ||| ||||||||||||||||| ||||||||||    
T  37794974 ggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttct 37795046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 44755611 - 44755663
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgatt 389  Q
    ||||||||||||||||||| || |   ||||||||||||||||||||||||||    
T  44755611 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 25153232 - 25153275
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||    
T  25153232 gtctggtggaccgatcacttttgattcgagatcgaaagccagtt 25153275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 48058723 - 48058680
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||    
T  48058723 gtctggtgggtcgatcgcttttgatttgagatcggaagtcagtt 48058680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 3419722 - 3419684
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  3419722 tggtgggctgatcacttttgattcgagatcgggagtcag 3419684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 3867131 - 3867173
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||    
T  3867131 tggtgggctgatcacttttgattcgagaccgggagtcagttct 3867173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 27993605 - 27993571
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    ||||||||| |||||||||||||||||||||||||    
T  27993605 gtctggtggaccgatcacttttgattcgagatcgg 27993571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 35206762 - 35206728
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    ||||||||||||||||||||||||| |||||||||    
T  35206762 gtctggtgggccgatcacttttgatccgagatcgg 35206728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 2613935 - 2613898
Alignment:
Q  365 tctggtgggccgatcacttttgattcgagatcggaagt 402  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  2613935 tctggttggccaatcacttttgattcgagatcggaagt 2613898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 29647556 - 29647625
Alignment:
Q  41 gtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    ||||||||||||||| ||| ||||||||||||  || ||| |||| ||||||| ||| | ||||||||||    
T  29647556 gtgatttcttttggaggccgcctctgttattcacgttcatattcgttgtcgctaactttggtttgagttt 29647625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 41089817 - 41089776
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    ||||||||| |||||||||||||||||||||| || ||||||    
T  41089817 gtctggtggaccgatcacttttgattcgagattgggagtcag 41089776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 47325954 - 47325913
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    |||||||||||||||| ||||||||| |||||||| ||||||    
T  47325954 gtctggtgggccgatcgcttttgatttgagatcgggagtcag 47325913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 17803007 - 17802975
Alignment:
Q  370 tgggccgatcacttttgattcgagatcggaagt 402  Q
    ||||||||||||||||| |||||||||||||||    
T  17803007 tgggccgatcacttttgcttcgagatcggaagt 17802975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 409
Target Start/End: Complemental strand, 46699005 - 46698809
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    |||||||||  ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||| |||||| |||| |||||||||||  || || |    
T  46699005 tctgtcttacatattgtgtgctggattctg-tgggccgattacttttgcttcgagatcgggagttggtgtctagctgcagtcttgtttggtaagctacag 46698907  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     |||||| | | | ||||| ||| |||||||||||||||||||| || ||| |||||||||||||||  |||||||||||||||||| ||||||||||    
T  46698906 agtttctttggtggaccgagggtgtggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttct 46698809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 12296011 - 12296232
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagt 286  Q
    ||||||||||||||||   | ||| |||||||||  ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||     
T  12296011 tttgcaccaccgcaaatt-tagtcgtctgtcttacatattgtgtgctggattctggtgggccgattacttttgcttcgagatcgggagttggcgtctagc 12296109  T
Q  287 tgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttg 386  Q
    |||| |||| ||||| | || |||||| | |||||| | ||||  |||  ||||||||| |||| |||| || ||  |||||||| ||||| | ||||||    
T  12296110 tgcattcttatttggctagctacggtgatcctctagtggaccgggggtaaggggtgcccctctggtttggtcctgaagtctggtgtgccgagcgcttttg 12296209  T
Q  387 attcgagatcggaagtcagttct 409  Q
    ||||||||||  |||||||||||    
T  12296210 attcgagatcaaaagtcagttct 12296232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 53823614 - 53823445
Alignment:
Q  240 tggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggg 339  Q
    |||||||||||||||||||| ||| ||||||||||| || |||||  |||||||||| |||| | |    ||||||||||| | | ||||  |||  |||    
T  53823614 tggtgggccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatcttgcttggcttgacttggtgtttctctggtgtaccggaggtgaggg 53823515  T
Q  340 gtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||| ||||   ||||||||| || |||||||||||||||||||||| ||||||||||    
T  53823514 gtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttct 53823445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 409
Target Start/End: Original strand, 35800328 - 35800546
Alignment:
Q  188 ttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagtt 287  Q
    |||| |||||||||| |||| || ||||||||| |||||||||| ||||||||| |||| |||||| ||||| ||| |||| |||||| ||| || |       
T  35800328 ttgctccaccgcaaatcatg-tcgtctgtcttacttattgtgtgttggattctgatgggtcggtta-ttttgcttcgagattgggagtgggcatccaacg 35800425  T
Q  288 gcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttga 387  Q
     |||||||||||||||||||||  ||||||||| | | | ||  |||  | ||||||||||||||||| |  ||  ||||||||  |||||| |||||||    
T  35800426 acaatcttgtttggttggcgacaatgtttctctggtggatcg-gggtaagtggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttga 35800524  T
Q  388 ttcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||    
T  35800525 ttcgagatcggaagtcagttct 35800546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 21988137 - 21988046
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggc 306  Q
    |||||| || |||||||||| |||||||||||||||||||||||| ||| ||||| |||||||| |||||| |||| |||||||||| ||||    
T  21988137 gtcttactttttgtgtgctgaattctggtgggccggttacttttgtttcgagatcaggagttggtgtctagctgcattcttgtttggctggc 21988046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 409
Target Start/End: Original strand, 38929698 - 38929884
Alignment:
Q  216 tcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtt 315  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||| |  | |||||||||||||||        |    
T  38929698 tcttactttttgtgtgctggattctggtgggccggttacttttgcttcgagatcggaagttggcgtttagctctattcttgtttggttggc-------at 38929790  T
Q  316 tctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||| | | ||||  |||  ||||||||| |||| || | || ||  ||||| |||||||||||||||||||||||||||   ||||||||||    
T  38929791 tctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagatcaagagtcagttct 38929884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 22811367 - 22811184
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||||||| ||  |||||| |||||||||||| ||| ||||||| | |||| ||||||||||||| |||||||||  |    ||||||||||| | |    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaattttgtttggtgtgatttggtgtttctctggtg 22811268  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     | ||  |||  || |||||||||||||||| || |   ||||||||||||||||| |||| |||||||||||| ||||||||||    
T  22811267 tatcgg-ggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttct 22811184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 50102395 - 50102484
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||||||  |||||||||||||||||||||   ||| ||||||||| ||| |||| || |||||||||||||||||| ||||||||||    
T  50102395 tctgtcttacatattgtgtgctggattctggtcaaccgattacttttgcttcgagattggaagttggcgtctagttgcattcttgtttgg 50102484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 28966749 - 28966812
Alignment:
Q  227 gtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgca 290  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||    
T  28966749 gtgtgctggattctggtgggccggttactttggcttcgagatcggaagttggcgtctagctgca 28966812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 21387294 - 21387228
Alignment:
Q  343 cccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||| |  ||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  21387294 cccttctgatttggtgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagttct 21387228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 6600147 - 6600078
Alignment:
Q  232 ctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||||||| | ||||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||    
T  6600147 ctggattctgataggccggttaattttgctttgagatcgggagttggtgtctagttgcaatcttgtttgg 6600078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 25753045 - 25753229
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    |||| |||||| ||| | ||||| | ||| ||||| ||| ||||||||||| || |||||| |||||||||||||||   |    ||||||||||| | |    
T  25753045 ttgtttgctggtttccgatgggcagcttaattttgcttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtgatgtggtgtttctctggtg 25753144  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     ||||  |||  || |||||| ||| ||||| || |   |||||||||| |||||||||||||||||||||||| ||||||||||    
T  25753145 taccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttct 25753229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 404
Target Start/End: Complemental strand, 39421190 - 39421042
Alignment:
Q  256 tttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttg 355  Q
    |||| ||| ||||||||| | || |||||| |||||||||||||||   |    ||||||||||||  | || || |||  |||||||||||||||| ||    
T  39421190 tttgcttcgagatcgggaatcggtgtctagctgcaatcttgtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatg 39421091  T
Q  356 atcatgtggtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
     || | | | ||||||||||||||||||||||||||||||||| |||||    
T  39421090 gtcttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 31050731 - 31050693
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagt 402  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31050731 gtctggtgggccgatcacttttgattcgagatcggaagt 31050693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 8255039 - 8255084
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  8255039 gtctggtgggccgatcacttttgatccgagatcagaagtcagttct 8255084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 8268457 - 8268502
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  8268457 gtctggtgggccgatcacttttgatccgagatcagaagtcagttct 8268502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 53756768 - 53756805
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaag 401  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53756768 gtctggtgggccgatcacttttgattcgagatcggaag 53756805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 2792335 - 2792300
Alignment:
Q  372 ggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  2792335 ggccgatcacttttgattcgagatcggaagtcagtt 2792300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 19672991 - 19673050
Alignment:
Q  242 gtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||||||||||||||| ||| |||||||||||  | |||||| |||||||||||||||    
T  19672991 gtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatcttgtttgg 19673050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 39041343 - 39041300
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  39041343 gtctggtgggccgatcacttttgattcgagatcaggagtcagtt 39041300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 16501718 - 16501784
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    |||| ||||| ||||||||| ||  || ||||||||||||| |||||||||||||||||| ||||||    
T  16501718 ggtggccttccgatttgatcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcag 16501784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 40813850 - 40813816
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    |||||||||||||||||||||||||||||||||||    
T  40813850 gtctggtgggccgatcacttttgattcgagatcgg 40813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 4305737 - 4305782
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||||    
T  4305737 gtctggtggggcgatcacttttgattcgagatcgggagttagttct 4305782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 31050906 - 31050794
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagt 286  Q
    |||||||||||||  | |||| || ||||||||  ||||| |||| ||| ||| ||||||||||||||||||| ||| ||| ||||||| || | ||||     
T  31050906 tttgcaccaccgcttatcatg-tcgtctgtcttgcttattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagc 31050808  T
Q  287 tgcaatcttgtttg 300  Q
    ||||||| ||||||    
T  31050807 tgcaatcctgtttg 31050794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 38637301 - 38637256
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||    
T  38637301 gtctggcgggccgatcacttttgattcgagatcgggagtcaattct 38637256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 2061834 - 2061762
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||  |||||||||| |   ||||||||||| |||||||||||||||||||| |  ||||||||||    
T  2061834 ggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttct 2061762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 19815416 - 19815356
Alignment:
Q  241 ggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||||| |||||||||| ||| |||||| |||| || |||||| |||||||||||||||    
T  19815416 ggtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttgg 19815356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 21387402 - 21387330
Alignment:
Q  233 tggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttgg 305  Q
    ||||||||||||||| | || | |||| ||| ||||||||||||||  |||||| ||||||| ||||||||||    
T  21387402 tggattctggtgggctgtttgcatttgcttcgagatcgggagttggtatctagtagcaatctggtttggttgg 21387330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 37707424 - 37707392
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatc 396  Q
    |||||||||||||||||||||||||||||||||    
T  37707424 gtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 397
Target Start/End: Original strand, 26474851 - 26474881
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcg 397  Q
    |||||||||||||||||||||||||||||||    
T  26474851 tggtgggccgatcacttttgattcgagatcg 26474881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 36962684 - 36962642
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagt 406  Q
    ||||||||||||||| ||||||||||||||||| | |||||||    
T  36962684 gtctggtgggccgattacttttgattcgagatcaggagtcagt 36962642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 6600014 - 6599969
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||| ||||||||| |||||||| |||| |||||    
T  6600014 gtctggtgggccgatcgcttttgattagagatcgggagtcggttct 6599969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 38929520 - 38929585
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgct 93  Q
    ||||||||||| ||||||| ||||||||  |  ||| |||||||||||||||| |||| |||||||    
T  38929520 gtggttgttgtgggtgattccttttggagactgcctatgttattcgggtccatattcgttgtcgct 38929585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 409
Target Start/End: Complemental strand, 41118024 - 41117991
Alignment:
Q  376 gatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||| ||||||    
T  41118024 gatcacttttgattcgagatcggaagtaagttct 41117991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 46699156 - 46699095
Alignment:
Q  49 ttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    ||||||| |||||||||||||||| ||||||| || | |||||||  || ||||||||||||    
T  46699156 ttttggaggccacctctgttattcaggtccatatttgttgtcgctatctcttgtttgagttt 46699095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 49747539 - 49747584
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||    
T  49747539 gtctggtgagccgatcacttttgatttgagatcgagagtcagttct 49747584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 16833078 - 16833050
Alignment:
Q  376 gatcacttttgattcgagatcggaagtca 404  Q
    |||||||||||||||||||||||||||||    
T  16833078 gatcacttttgattcgagatcggaagtca 16833050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 30167628 - 30167588
Alignment:
Q  369 gtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||| |||||||||||||||||||||||| |||| |||||    
T  30167628 gtgggtcgatcacttttgattcgagatcgggagtcggttct 30167588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 30964454 - 30964498
Alignment:
Q  365 tctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||| |||||||||||||||||||||| |||||| |||| |||||    
T  30964454 tctgatgggccgatcacttttgattcgtgatcgggagtccgttct 30964498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 32057136 - 32057168
Alignment:
Q  375 cgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||| |||||||||||||||||    
T  32057136 cgatcacttttgatttgagatcggaagtcagtt 32057168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 48098320 - 48098388
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||||| ||||   | | | |||||| |||||||||| ||||||||||| ||||||||    
T  48098320 ggtgcccttctgatttggtcataaagcccgatgggcctatcacttttgtttcgagatcgggagtcagtt 48098388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 212 - 409
Target Start/End: Complemental strand, 33968834 - 33968637
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    ||||||||| ||||| | ||||| ||| ||||||| |||||||||||| | | ||||||| ||||||||||||  || | ||||||||||||||| ||||    
T  33968834 tctgtcttacttattatatgctgaattttggtgggtcggttacttttgctccgagatcggaagttggcgtctaactgtattcttgtttggttggctacgg 33968735  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||| | ||||||| ||| ||||||| |||||||||||| | |||| |||| |||||  |||| |||||||||||||||||| ||||||||||    
T  33968734 tgtttctctggtgaaccgagggtatggggtggccttctgatttggttatgtagtctagtgggtagatcgcttttgattcgagatcgggagtcagttct 33968637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 223 - 409
Target Start/End: Complemental strand, 32935549 - 32935363
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctag 322  Q
    ||||||||||||||||| |||||| |||||||||||| ||  ||||| | |||||| |||||| ||||||||| ||||| | |  | ||||||||| |      
T  32935549 tattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagttggtgtctagctgcaatcttctttggcttgttatggtgtttctatga 32935450  T
Q  323 cgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     | | ||  |||  ||||| ||||||||||||| || ||  |||||||||||||||| |||||||||||||||||| ||||||||||    
T  32935449 tggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttct 32935363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 12793951 - 12794172
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagt 286  Q
    ||||| ||||| |||| |||| |||| ||||||| |||||||||||||||||||| |||| ||| | |||||| ||| |||||||||||||| |||||      
T  12793951 tttgctccacctcaaatcatg-tcatttgtcttacttattgtgtgctggattctgatgggtcgg-tccttttgcttcgagatcgggagttggagtctaac 12794048  T
Q  287 tgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatc-actttt 385  Q
      || | | ||||||||||| | ||||||||||||| |||||   |||  |||||| ||||||| |||| |  |   |||| ||||||||||| ||||||    
T  12794049 aacattatcgtttggttggctatggtgtttctctagtgaaccaggggtaaggggtgtccttctgttttggttctaaagtctagtgggccgatcaactttt 12794148  T
Q  386 gattcgagatcggaagtcagttct 409  Q
    ||||||||||| | ||||||||||    
T  12794149 gattcgagatcaggagtcagttct 12794172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 13098781 - 13098699
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgt 297  Q
    |||||| || |||||||||| |||||| ||||||||||||||||| ||| |||| |||||||||||||||| |||| ||||||    
T  13098781 gtcttactttttgtgtgctgcattctgatgggccggttacttttgcttcgagattgggagttggcgtctagctgcattcttgt 13098699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 20701899 - 20701827
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||| |||| | | |||||| |||||||||||||||||||||||||| ||| ||||||    
T  20701899 ggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttct 20701827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 15943900 - 15943987
Alignment:
Q  233 tggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctct 320  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| | ||  ||||||| | |||||||||||||    
T  15943900 tggatgctggtgggccggttaattttgcttcaagatcgggagttggagtctaattgcattttttattggttgactacggtgtttctct 15943987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 9223876 - 9223988
Alignment:
Q  185 gttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtcta 284  Q
    ||||||| |||||||||| |||| | || ||||||| || ||||||| ||||| ||||||||||||||| ||||| ||| |||||||||||||| ||||     
T  9223876 gttttgctccaccgcaaatcatgttgat-tgtcttactttttgtgtgatggatgctggtgggccggtta-ttttgcttcgagatcgggagttggtgtctt 9223973  T
Q  285 gttgcaatcttgttt 299  Q
      |||||||||||||    
T  9223974 tctgcaatcttgttt 9223988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 26216112 - 26216043
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||  |  | |||||||||||||||||||||||||||||||||| ||||||||||    
T  26216112 ggtgcccttctgatttgattctaag-tctggtgggccgatcacttttgattcgagatcgggagtcagttct 26216043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 26534813 - 26534743
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||| |||||||||||| || ||  |||||||||||||||||||||||||||||||| || ||||||||||    
T  26534813 ggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttct 26534743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 393
Target Start/End: Complemental strand, 3880791 - 3880623
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    |||| |||||| ||| |||||||| |||||||||| ||  ||||||||||| || |||||| ||| |||||||||||   |    ||||||||||| |      
T  3880791 ttgtttgctggtttccggtgggccagttacttttgctttgagatcgggagtcggtgtctagctgctatcttgtttggcatgatttggtgtttctctggtt 3880692  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgag 393  Q
     ||||| |||  | ||||||||||||||||| || |   || |||||||||||||||||||||||||||    
T  3880691 taccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 3117478 - 3117550
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||| || ||||| | || | || |||||||||||||||||||||||| ||||||| ||||||||||    
T  3117478 ggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcagttct 3117550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 34105428 - 34105468
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcagtt 34105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 409
Target Start/End: Complemental strand, 16510492 - 16510325
Alignment:
Q  243 tgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatc-ttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggt 341  Q
    ||||||||||||||||| ||| ||||||||||| || |||||| ||||||| |||||||  | |  | ||| ||||||| | | ||||| ||   |||||    
T  16510492 tgggccggttacttttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgagggcaaggggt 16510393  T
Q  342 gcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||| || ||||| |  |   |||| ||||||||||||||||||||||||||| |  ||||||||||    
T  16510392 gccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttct 16510325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 15132733 - 15132655
Alignment:
Q  222 ttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttg 300  Q
    |||||||||| ||| ||  ||||||||||||||||||| ||| ||||||||||| || | |||| ||||||| ||||||    
T  15132733 ttattgtgtgatggttttcggtgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatcctgtttg 15132655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 7546498 - 7546461
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaag 401  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7546498 gtctggtggaccgatcacttttgattcgagatcggaag 7546461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 9224053 - 9224098
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||    
T  9224053 gtctggtgggctgatcgcttttgattcgagatcgggagtcagttct 9224098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 34090375 - 34090418
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||    
T  34090375 gtctggtgggtcgatcaattttgattcgagatcgggagtcagtt 34090418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 34092807 - 34092846
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtc 403  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  34092807 gtctggtgagccgatcacttttgattcgagataggaagtc 34092846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 20499910 - 20499968
Alignment:
Q  343 cccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaag 401  Q
    |||||||||||||||  ||  || |||||| |||||| |||||||||||||||||||||    
T  20499910 cccttctgatttgattctggagtatggtggaccgatcgcttttgattcgagatcggaag 20499968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 26535108 - 26535026
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    ||||||||||| ||||||| ||| ||||  || |||||||||||||||||||| |  | ||||||| ||| ||||||| ||||    
T  26535108 gtggttgttgtgggtgattccttgtggagaccgcctctgttattcgggtccatatctgttgtcgcttactcttgtttgtgttt 26535026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 9223717 - 9223801
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagtttggg 113  Q
    ||||||||| | ||||||| |||||||| ||||  ||| |||||||||| ||| |||| |||||||| || ||||||| |||||||    
T  9223717 gtggttgttatgggtgattccttttggaggccatttcttttattcgggt-catattcgttgtcgctgtctcttgtttgggtttggg 9223801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 21266127 - 21266168
Alignment:
Q  366 ctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||||||| |||||||||||||||||| ||| ||||    
T  21266127 ctggtgggccgatcgcttttgattcgagatcgggagttagtt 21266168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 409
Target Start/End: Original strand, 5556449 - 5556627
Alignment:
Q  231 gctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccga 330  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||| |   ||||||||||  |||| ||| ||||||||| | | |||||    
T  5556449 gctggattcaggtgggccggttacttttgattcgagatcggaagttggtgtctagctaacatcttgtttgtctggctacgatgtttctctcgtggaccga 5556548  T
Q  331 cggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
      ||||||||||||||| ||||||| || ||| |||||||||| ||||| |||||||||||||||||| ||||||||||    
T  5556549 gtgtttggggtgcccttttgatttggtcttgtagtctggtggggcgatcgcttttgattcgagatcgggagtcagttct 5556627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 407
Target Start/End: Complemental strand, 30935627 - 30935416
Alignment:
Q  195 accgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatct 294  Q
    |||||||| |||| ||||| |||||| || ||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||||||||||||  ||| | |    
T  30935627 accgcaaatcatg-tcatccgtcttacttgttgtgtgctggattctgatgggccggtta-ttttgcttcgagattgggagttggcgtctagcggcattat 30935530  T
Q  295 tg-tttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgag 393  Q
    || |||||||||| || |||||||||| | | ||||  |||  ||||||||||||||||||| |  ||  || |||||||| |||| |||||||||| ||    
T  30935529 tgttttggttggctacagtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtttggtgggctgatcgcttttgattcaag 30935430  T
Q  394 atcggaagtcagtt 407  Q
    ||||| ||| ||||    
T  30935429 atcgggagttagtt 30935416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 407
Target Start/End: Complemental strand, 823635 - 823461
Alignment:
Q  233 tggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacg 332  Q
    ||||||||||||| ||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||| | |  | ||||||||||| | | ||||  |    
T  823635 tggattctggtggaccggttaattttgcttcaagatcaggagttggtgtctagttgcaatcttgtttggcttgttatggtgtttctctggtggaccgtgg 823536  T
Q  333 gtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||   |||||||||||  ||||| | |||  | ||  ||||||||||||||||||||||||||||  ||||||||    
T  823535 gtaaagggtgcccttcaaatttggttatgaagactaatgggccgatcacttttgattcgagatcgagagtcagtt 823461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 27398820 - 27398928
Alignment:
Q  214 tgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtg 313  Q
    |||||||  ||||||||||||||||||||||  || |||| ||||| ||| |||||||||||| | |||||| | ||||||||||||| |||| | ||||    
T  27398820 tgtcttacatattgtgtgctggattctggtgcaccagttatttttgcttcgagatcgggagtttgtgtctagctacaatcttgtttggctggctatggtg 27398919  T
Q  314 tttctctag 322  Q
    |||||||||    
T  27398920 tttctctag 27398928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 47945585 - 47945661
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||  ||| ||||||||||    
T  47945585 ttgtgtgctggattctggtgtgccggttactttagcttcgagatcgggagttggcgtctagcagcattcttgtttgg 47945661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 1653108 - 1653040
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgt 281  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  1653108 tctgtcttacttattgtgtgctgaattctgatgggccgatta-ttttgcttcaagatcgggagttggcgt 1653040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 17550969 - 17551014
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  17550969 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 17551014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 19176514 - 19176559
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  19176514 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 19176559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 4464127 - 4464071
Alignment:
Q  241 ggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgt 297  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||    
T  4464127 ggtgggccggttacttttgcttcgagatcgggagtcggtgtctagttgcaatcttgt 4464071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 14879421 - 14879491
Alignment:
Q  338 gggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttc 408  Q
    |||||||||||||||| | || |   ||||||||||||||||||||||||||||||||||| |||| ||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttc 14879491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 14755471 - 14755289
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||||||  ||| | ||||||||||||||||| ||| ||||||||||| ||  ||||| ||||||||||||| |   |    ||||||||||| | |    
T  14755471 ttgtgtgctgatttccgatgggccggttacttttgcttcgagatcgggagtcggtatctagctgcaatcttgtttcgcgcgttttggtgtttctctggtg 14755372  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     ||||| |||  ||||||||||| |  |||  |  |   ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  14755371 taccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttct 14755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 43012387 - 43012432
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  43012387 gtctggtggcccgatcacttttgattcgagatcgggagtcagttct 43012432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 34475823 - 34475783
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  34475823 gtctggtgggccgatcacttttgattcgagatcgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 2392573 - 2392530
Alignment:
Q  366 ctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||| |||||||||||||||||||||| |||||||||||||    
T  2392573 ctggtggaccgatcacttttgattcgagattggaagtcagttct 2392530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 2394320 - 2394277
Alignment:
Q  366 ctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||| |||||||||||||||||||||| |||||||||||||    
T  2394320 ctggtggaccgatcacttttgattcgagattggaagtcagttct 2394277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 25594740 - 25594669
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtct 283  Q
    ||||||||| ||||||| |||||||||||| ||||||| ||||||||  ||| ||||||||| |||| ||||    
T  25594740 tctgtcttacttattgtatgctggattctgatgggccgattactttttcttcgagatcgggacttggtgtct 25594669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 30127274 - 30127321
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctct 411  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  30127274 gtctggtgagccgatcgcttttgattcgagatcgggagtcagttctct 30127321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 47945718 - 47945761
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||    
T  47945718 gtccggtgggccgatcacttttgattcgagatcgggagtcagtt 47945761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 20710777 - 20710743
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    |||||||||||||||||||||||||||||||||||    
T  20710777 gtctggtgggccgatcacttttgattcgagatcgg 20710743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 37123397 - 37123439
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggagtcagttct 37123439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 39021342 - 39021300
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttct 39021300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 45163872 - 45163910
Alignment:
Q  369 gtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  45163872 gtgggccgatcacttttgattcgagatcagaagtcagtt 45163910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 9584122 - 9584077
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||    
T  9584122 gtctggtggatcgatcacttttgattcgagatcgggagtcagttct 9584077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 33144018 - 33143973
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||    
T  33144018 gtctggtggatcgatcacttttgattcgagatcgggagtcagttct 33143973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 823836 - 823788
Alignment:
Q  32 ttgttgttggtgatttcttttggatgccacctctgttattcgggtccat 80  Q
    |||||||||||| |||||||||   ||||||||||||||||||||||||    
T  823836 ttgttgttggtgttttcttttgtgggccacctctgttattcgggtccat 823788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 14193925 - 14193997
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||| || |   |||||| || |||||||||||||||||||||| || |||| |||||    
T  14193925 ggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttct 14193997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 19295934 - 19295891
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||    
T  19295934 gtctggtgggcctatcacttttgattcgatatcggaagttagtt 19295891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 20611801 - 20611840
Alignment:
Q  370 tgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  20611801 tgggccgatcatttttgattcgagatcgggagtcagttct 20611840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 24099396 - 24099353
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||    
T  24099396 gtctggtgggccgatcacttttgattcgatatcgggaatcagtt 24099353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 40023641 - 40023602
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtc 403  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  40023641 gtctggtggaccgatcacttttgattcgagatcgggagtc 40023602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 1653290 - 1653208
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    ||||||||||| | |||||||| ||||| |   ||||||||||||||||||||  ||| |||||||  || ||||||||||||    
T  1653290 gtggttgttgtggatgatttctattggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgagttt 1653208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 23328557 - 23328482
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttg 300  Q
    |||||||||||||  || | ||||||||||  ||||| ||| |||||||||||||| |||||| |||||| |||||||    
T  23328557 tattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttg 23328482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 1652975 - 1652910
Alignment:
Q  344 ccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||| || ||   ||| |||||||||||||||||||||||||||| | ||| ||||||    
T  1652975 ccttctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttct 1652910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 25647557 - 25647730
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||| ||| ||| | ||||||||||||||||| ||| ||| ||||||| || |||||| ||||||  |||||||   |    ||||||||||| | |    
T  25647557 ttgtgtgttggtttccgatgggccggttacttttgcttcgagaacgggagtcggtgtctagctgcaattctgtttggcgtgatttggtgtttctctggtg 25647656  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcgg 398  Q
     ||||   ||   |||||||||||||||||| || |   |||||  ||||| ||||||||||||||||||||||    
T  25647657 taccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgg 25647730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 45398808 - 45398841
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcg 397  Q
    ||||||||| ||||||||||||||||||||||||    
T  45398808 gtctggtggaccgatcacttttgattcgagatcg 45398841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 409
Target Start/End: Complemental strand, 1269 - 1041
Alignment:
Q  178 gattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttg 277  Q
    ||||||||||| ||||||||||||| |||| || | |||||||  |||||||||||||||||| |||||||| ||||||||| ||| |||| ||||||||    
T  1269 gattgatgttt-gcaccaccgcaaatcatg-tcgtttgtcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttg 1172  T
Q  278 gcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccga 377  Q
    | |||||| |||||||||||||| |||     ||||||||||| | | || |    |  ||||| ||||||||||||| |||||  ||||||||||||||    
T  1171 gtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccga 1073  T
Q  378 tcacttttgattcgagatcggaagtcagttct 409  Q
    || |||||||||||||||||| ||||||||||    
T  1072 tcgcttttgattcgagatcgggagtcagttct 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 409
Target Start/End: Original strand, 4471752 - 4471980
Alignment:
Q  178 gattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttg 277  Q
    ||||||||||| |||||||||||||   || || || |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  4471752 gattgatgttt-gcaccaccgcaaattttg-tcgtcagtcttacttattgtgtgatggattctggtgggccggttacttttgcttcaagatcgggagttg 4471849  T
Q  278 gcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccga 377  Q
    |||||||  | |  | |||||||| || | || |||||||||| | | ||||  |||  |||| |||| |||| |||| || ||  ||||||||||||||    
T  4471850 gcgtctatctactttattgtttggctgactacagtgtttctctggtggaccgggggtaagggg-gcccgtctggtttggtcctggagtctggtgggccga 4471948  T
Q  378 tcacttttgattcgagatcggaagtcagttct 409  Q
    || | |||||||||||||||| ||||||||||    
T  4471949 tcgcctttgattcgagatcgggagtcagttct 4471980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 22885340 - 22885157
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||| |||||| |||   |||||||||  ||| |||||||| |||| | |    
T  22885340 ttgtgtgttggatgctggtgggccggttacttttgcttcgagatcgggagttggtgtctagctgcttccttgtttggcgggctacggtgttgctctggtg 22885241  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     |  |  |||| |||||||||  ||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  22885240 gattgggggttaggggtgccc-gctggtttgatcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 22885157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 348
Target Start/End: Original strand, 3745230 - 3745356
Alignment:
Q  222 ttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    |||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||| |||| ||| ||||||  ||| ||| |||||||||     
T  3745230 ttattgtgtgctggattctggtgggccggttacttttactttgagatcgggagttggcgtctagctgcagtctcgtttggcaggctacgctgtttctctg 3745329  T
Q  322 gcgaaccgacggtttggggtgcccttc 348  Q
    | | ||||| ||| | |||||||||||    
T  3745330 gtggaccgagggtatagggtgcccttc 3745356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 15710579 - 15710752
Alignment:
Q  224 attgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagc 323  Q
    ||||| |||| ||||||||||||||  ||||||||| ||  |||||||||||||| || ||||||||||||||||||| || | |  |||||||||| |     
T  15710579 attgtctgctagattctggtgggccaattacttttgctttgagatcgggagttggtgtttagttgcaatcttgtttggctgactatagtgtttctctggt 15710678  T
Q  324 gaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcg 397  Q
    ||||||  |||  ||||||||||||||||| || |  |  ||||||||  || |||||||||||||||||||||    
T  15710679 gaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcg 15710752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 409
Target Start/End: Complemental strand, 25505130 - 25504933
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||| | |||||| |||||| | | ||||  ||| | |||| ||||    
T  25505130 tctgtcttacttattgtgtgctggattctggtgggccgattacttttgcttcgagatcagaagttggtgtctagctactatctgattttgctggctacgg 25505031  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||| || | | | || || | |  ||||||||||| ||||||| || ||  ||||||||| || ||| ||||| |||||||||||| ||||||||||    
T  25505030 tgttcctatggtggactgaggataaggggtgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagttct 25504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 15723042 - 15723217
Alignment:
Q  224 attgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctag--ttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    ||||| |||||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||  ||||||||||||||||  | | |  ||||||||||     
T  15723042 attgtctgctggattctggtggaccggttacttttggttcgagatagggagttggtgtctagaattgcaatcttgtttggcggactatagtgtttctctg 15723141  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcg 397  Q
    | ||||||  ||| |||||||||||||||||| ||   ||  ||||| ||  || |||||||||||||||||||||    
T  15723142 gtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgattcgagatcg 15723217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 412
Target Start/End: Original strand, 18680928 - 18681125
Alignment:
Q  214 tgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtg 313  Q
    ||||||| |||||||||| ||||||||| |||| |  |  | |||| ||| |||||||||||||||||||||  ||  | ||||||||||| | ||||||    
T  18680928 tgtcttacttattgtgtgttggattctgatgggtcaatc-catttgcttcgagatcgggagttggcgtctagcggcgttattgtttggttgactacggtg 18681026  T
Q  314 tttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctctg 412  Q
    ||||||||| | ||||  |||  ||  ||||||||||||||| | |||  || ||||||||||||  | |||||||||||||||| |||||||||||||    
T  18681027 tttctctagtggaccgggggtaaggactgcccttctgatttggttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagttctctg 18681125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 15126620 - 15126532
Alignment:
Q  216 tcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttg 304  Q
    ||||| || ||||||||| |||||||||||| | |||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||    
T  15126620 tcttactttttgtgtgctagattctggtgggtcagttacttttgcttcgagatcgggagttggcgtctagctgcattcttgtttggttg 15126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 1269468 - 1269540
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||  || |   ||||||||||||||||||||||||||||||||||||||||||||||    
T  1269468 ggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttct 1269540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 409
Target Start/End: Original strand, 29486959 - 29487187
Alignment:
Q  178 gattgatgttttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtggg-ccggttacttttgattcaagatcgggagtt 276  Q
    ||||||||||| ||||||||||||  |||| |  ||||| ||| || |||||||||||||||||  ||| ||||||||||||| ||| ||||||||||||    
T  29486959 gattgatgttt-gcaccaccgcaattcatgttg-tctgttttacttgttgtgtgctggattctgacggggccggttacttttgcttcgagatcgggagtt 29487056  T
Q  277 ggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccg 376  Q
    || |||||| |||  |||||| |||  |||  |||||||||||| | | || |  |||| ||||||||| |||| ||||||| ||  ||||||| ||||     
T  29487057 ggtgtctagctgctttcttgtctggcgggc-tcggtgtttctctggtggactgggggttaggggtgcccgtctggtttgatcttgaagtctggt-ggcca 29487154  T
Q  377 atcacttttgattcgagatcggaagtcagttct 409  Q
    ||| ||||||||||||||| |  ||||||||||    
T  29487155 atcgcttttgattcgagattgatagtcagttct 29487187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 407
Target Start/End: Complemental strand, 10173798 - 10173604
Alignment:
Q  214 tgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg-ttggcgacggt 312  Q
    |||||||||||||||||  ||| ||| |||| || ||||||||||| |||  |||||| ||| || |||||| ||||||||||||||| |||   |||||    
T  10173798 tgtcttatttattgtgtattggtttccggtgtgctggttacttttgtttcgggatcggaagtcggtgtctagctgcaatcttgtttggcttgataacggt 10173699  T
Q  313 gtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||| | | |||   |||   |||||| ||| || |||| || |   |||| |||||||||||||||||||||||||||||||||| ||||    
T  10173698 gtttctctggtgtaccagaggtgaagggtgctcttttgttttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagtt 10173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 2062782 - 2062862
Alignment:
Q  226 tgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggc 306  Q
    |||||||||||| ||||||||||  ||||||||| ||| |||||||||||||| |||||| |||| |||||||||| ||||    
T  2062782 tgtgtgctggatgctggtgggccaattacttttgcttcgagatcgggagttggtgtctagctgcattcttgtttggctggc 2062862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 13337259 - 13337331
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||| | |   ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  13337259 ggggtgcccttctgatttgaccttaaagtctgatgggccgatcacttttgattcgaaatcggaagtcagttct 13337331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 405
Target Start/End: Original strand, 7874163 - 7874344
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctag 322  Q
    |||||||||||||  || ||||||||||||  ||||| ||| |||||||||||||| |||||| ||||||| || |||  | |  | |||| ||||||||    
T  7874163 tattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcctgcttgacttgatatggtg-ttctctag 7874261  T
Q  323 cgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
     | ||||| ||    ||||||||| |||||||| |  |   |||||||||| |||||||||||||||||||||||| ||||||    
T  7874262 tgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcag 7874344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 412
Target Start/End: Complemental strand, 31902624 - 31902435
Alignment:
Q  222 ttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    |||| ||||||||||||||| || |||| | | ||||  ||| || |||||||||||||| |||  ||| | | || ||||||||  |||| |||||||     
T  31902624 ttatagtgtgctggattctgatgagccgatca-ttttccttcgaggtcgggagttggcgtttagaggcattatggtgtggttggcttcggtatttctctg 31902526  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctctg 412  Q
    | | ||||  |||| |||||| |||||| |||||||  ||  |||||||||||| ||| ||||| |||||||||||| |||||||||||||    
T  31902525 gtggaccgggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctg 31902435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 405
Target Start/End: Complemental strand, 14106769 - 14106552
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagt 286  Q
    |||||||||||||  | |||| || ||||||||  |||||||||| ||| ||| ||||||||||||||||||| ||| |||  |||||| || | ||||     
T  14106769 tttgcaccaccgcttatcatg-tcgtctgtcttgcttattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagc 14106671  T
Q  287 tgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttg 386  Q
    ||||||| ||||||  | |    |||||| ||||   | ||| | ||   |||||||||| |||||||| || |   |||||||||||||||||||||||    
T  14106670 tgcaatcctgtttgacttgatttggtgttcctctcatgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttg 14106571  T
Q  387 attcgagatcggaagtcag 405  Q
    |||| ||||||| ||||||    
T  14106570 attcaagatcgggagtcag 14106552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 41086883 - 41086825
Alignment:
Q  338 gggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatc 396  Q
    |||||||||||||||||| |||| | |||||||||| | ||||||||||||||||||||    
T  41086883 gggtgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatc 41086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 14405210 - 14405251
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  14405210 gtctggtgggccgatcacttttgattcgagatcgggagtcag 14405251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 39338934 - 39338889
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||    
T  39338934 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttct 39338889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 40704028 - 40704096
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggttactt 256  Q
    |||||||||||||||| |||| || | |||| ||  ||||||||||||||||||||||||||||||||||    
T  40704028 tttgcaccaccgcaaatcatg-tcgtttgtcatacatattgtgtgctggattctggtgggccggttactt 40704096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 10524109 - 10524149
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  10524109 gtctggtgggccgatcacttttgattcgagatcgggagtca 10524149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 30967322 - 30967262
Alignment:
Q  233 tggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatc 293  Q
    |||||||||||||||||||| |||||| ||||| |||| ||||||| ||||||||| ||||    
T  30967322 tggattctggtgggccggttgcttttgcttcaaaatcgagagttggtgtctagttggaatc 30967262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 22885537 - 22885450
Alignment:
Q  28 gtggttgttgttggtgatttcttttggatgccacctctgttattcgggtcca-ttttcggtgtcgctgactattgtttgagtttgggg 114  Q
    |||||||| || ||||||| ||||| || ||||||||||||||||||||||| ||||||  ||||||  || |||||||||||| |||    
T  22885537 gtggttgtggtgggtgattcctttttgaggccacctctgttattcgggtccatttttcgtcgtcgctacctcttgtttgagtttcggg 22885450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 4162089 - 4162055
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    |||||||||||||||||||||||||||||||||||    
T  4162089 gtctggtgggccgatcacttttgattcgagatcgg 4162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 16959863 - 16959928
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtcttatttattgtgtgctggattctggtgggccggtta 253  Q
    |||||||||||||||| |||| |  | |||||||  |||||||||||||||||||||||||||||||    
T  16959863 tttgcaccaccgcaaatcatgttg-tatgtcttacatattgtgtgctggattctggtgggccggtta 16959928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 15126479 - 15126434
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||    
T  15126479 gtctggtgggccgatcatttttgattcgagatcgggagtcggttct 15126434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 16959710 - 16959771
Alignment:
Q  32 ttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgct 93  Q
    ||||||| ||||||| |||||||| ||| |||||||||||||||||||| |||  |||||||    
T  16959710 ttgttgtgggtgattccttttggaggccgcctctgttattcgggtccatattccttgtcgct 16959771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 16959994 - 16960039
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||    
T  16959994 gtctggtgggccgatcgcttttgattcgagatcgagagtcagttct 16960039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 17105282 - 17105359
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttg 300  Q
    ||||||||||||| ||| |||||| |||||||||||| ||  ||||  ||||| ||||||||| ||||| ||||||||    
T  17105282 tattgtgtgctggtttccggtgggtcggttacttttgcttggagataaggagtcggcgtctagctgcaaccttgtttg 17105359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 25505305 - 25505220
Alignment:
Q  25 gttgtggttgttgttggtgatttcttttggatgccacctctgttattcgggtccattttcggtgtcgctgactattgtttgagttt 110  Q
    |||||||||||||| |||||| ||||||||| |    ||||||| |||||||||||||||| || ||||  || ||||||||||||    
T  25505305 gttgtggttgttgtgggtgatgtcttttggaggttgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttt 25505220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 33788701 - 33788656
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||    
T  33788701 gtctggtgggccgatcgcttttgattcgagattgggagtcagttct 33788656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 390
Target Start/End: Complemental strand, 37770833 - 37770684
Alignment:
Q  241 ggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttgggg 340  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||    |||||   |     |||||||||| | | ||||| |||  ||||    
T  37770833 ggtgggccggttacttttgcttcgagatcgggagttggtgtctagcagcaattcgatttggcgcgatttagtgtttctctggtgtaccgagggtgagggg 37770734  T
Q  341 tgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattc 390  Q
    ||||| ||||||||| || |  ||| ||||||||||||||||||||||||    
T  37770733 tgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattc 37770684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 15817588 - 15817520
Alignment:
Q  233 tggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||| ||||||||||||||| |||||| ||| |||||| ||||| | ||||||||||||  ||||||||    
T  15817588 tggactctggtgggccggttgcttttgcttcgagatcgagagttagtgtctagttgcaagtttgtttgg 15817520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 23650258 - 23650334
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttgg 301  Q
    |||||| ||||||||||||||||||||||  |  | ||| ||| |||||||||| |||||||||| | |||||||||    
T  23650258 ttgtgtcctggattctggtgggccggttaactaggcttcgagaccgggagttggtgtctagttgcgaccttgtttgg 23650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 23665473 - 23665437
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaa 400  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23665473 gtctagtgggccgatcacttttgattcgagatcggaa 23665437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 34143122 - 34143079
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||    
T  34143122 gtctggtgagccgatcacttttgcttctagatcggaagtcagtt 34143079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 387185 - 387230
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||| |||||||||||||| |||||||| ||||| ||||    
T  387185 gtctggtgggctgatcacttttgatttgagatcgggagtcaattct 387230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 2062901 - 2062942
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcag 2062942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 23650397 - 23650442
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||| |||| |||||||||||||||||| ||||| ||||    
T  23650397 gtctggtgggctgatcgcttttgattcgagatcgggagtcatttct 23650442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 915518 - 915478
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  915518 tggtgggctgatcgcttttgattcgagatcgaaagtcagtt 915478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 409
Target Start/End: Original strand, 46963 - 47150
Alignment:
Q  224 attgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctag--ttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    ||||| |||||||||||||||| ||||||||||||| ||| |||| | ||||||| ||||||  |||||||||||||||| || | |  ||||||||||     
T  46963 attgtctgctggattctggtggaccggttacttttggttcgagatagtgagttggtgtctagaattgcaatcttgtttggctgactatagtgtttctctg 47062  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    | ||||||  |||  ||||||||||||||||| || | ||  ||||||||  || ||||||||||||||||||||| || ||||||||    
T  47063 gtgaaccgggggtgaggggtgcccttctgattagaccctgatgtctggtgaaccaatcacttttgattcgagatcgtaaatcagttct 47150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 59491 - 59664
Alignment:
Q  224 attgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagc 323  Q
    ||||| |||| ||||||||||||||  ||||||||| ||  |||||||||||||| || ||||||||||||||||||| || | |  |||||||||| |     
T  59491 attgtctgctagattctggtgggccaattacttttgctttgagatcgggagttggtgtttagttgcaatcttgtttggctgactatagtgtttctctggt 59590  T
Q  324 gaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcg 397  Q
    ||||||  |||  ||||||||||||||||| || |  |  ||||||||  || |||||||||||||||||||||    
T  59591 gaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcg 59664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 71599 - 71774
Alignment:
Q  224 attgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctag--ttgcaatcttgtttggttggcgacggtgtttctcta 321  Q
    ||||| |||||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||  ||||||||||||||||  | | |  ||||||||||     
T  71599 attgtctgctggattctggtggaccggttacttttggttcgagatagggagttggtgtctagaattgcaatcttgtttggcggactatagtgtttctctg 71698  T
Q  322 gcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcg 397  Q
    | ||||||  ||| |||||||||||||||||| ||   ||  ||||| ||  || |||||||||||||||||||||    
T  71699 gtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgattcgagatcg 71774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 36542 - 36764
Alignment:
Q  187 tttgcaccaccgcaaagcatggtcatctgtc-ttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctag 285  Q
    |||||||||||||| | |||| |||| |||| || ||| ||||||| ||| ||| ||||||||| ||| ||||||||| ||||| ||||| || ||||||    
T  36542 tttgcaccaccgcatatcatg-tcatttgtcattcttttttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctag 36640  T
Q  286 ttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcactttt 385  Q
     |||||| ||||||||   |    ||||||||||| | | |||||  ||  ||||||||||||||||||| || |   |||||| |||| ||||||||||    
T  36641 ctgcaattttgtttggcgtgatttggtgtttctctggtgtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcactttt 36740  T
Q  386 gattcgagatcggaagtcagttct 409  Q
    ||||||||||||| ||||||||||    
T  36741 gattcgagatcgggagtcagttct 36764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 409
Target Start/End: Complemental strand, 30236289 - 30236152
Alignment:
Q  272 gagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtg 371  Q
    ||||||| ||||||| ||| | | ||||||||||| ||||||||||||| | | ||||  |||  ||||||||||||||||||| |  ||  ||||||||    
T  30236289 gagttggagtctagtggcattatggtttggttggctacggtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtg 30236190  T
Q  372 ggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    || ||||| |||||||||||||||||| ||||||||||    
T  30236189 ggacgatcgcttttgattcgagatcgggagtcagttct 30236152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 18690303 - 18690477
Alignment:
Q  224 attgtgtgctggattctggtgggccggttacttttgatt-caagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctag 322  Q
    ||||| |||| ||||||||||||||  ||||||||| || | |||| ||||||||| || ||||||||||||||||||| || | |  |||||||||| |    
T  18690303 attgtctgctagattctggtgggccaattacttttggtttcgagatagggagttggtgtttagttgcaatcttgtttggctgactatagtgtttctctgg 18690402  T
Q  323 cgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcg 397  Q
     ||||||  |||  ||||||||||||||||| || |  |  ||||||||  || |||||||||||||||||||||    
T  18690403 tgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgattcgagatcg 18690477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 411
Target Start/End: Original strand, 35062321 - 35062516
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgt 314  Q
    |||||| |||||||||||||||||||| || |||  | | ||||| ||| |||||||||||||||||||||  ||| | ||||||||||||| || ||||    
T  35062321 gtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgt 35062419  T
Q  315 ttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctct 411  Q
    ||| ||     | ||| |||  ||||||||  ||||||||| |  ||  ||||||||||||||||  ||||||||||||||||  ||||||||||||    
T  35062420 ttcactgaaagatcgagggtaaggggtgcctctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcagttctct 35062516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 417
Target Start/End: Original strand, 10552130 - 10552333
Alignment:
Q  212 tctgtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacgg 311  Q
    ||||||||| ||||||||||||||||| || ||||||| | | ||||| ||| |||||||||||||||| ||||   || | ||||||| ||| | || |    
T  10552130 tctgtcttacttattgtgtgctggattttgatgggccgatca-ttttgcttcgagatcgggagttggcgcctagcgacattattgtttgattgactacag 10552228  T
Q  312 tgtttctctagcgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttctct 411  Q
    ||||||||| |   |||   ||   |||||||||| |||||||| |  ||  |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  10552229 tgtttctctggtagaccaggggcaaggggtgccct-ctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttctct 10552327  T
Q  412 gcttct 417  Q
    | ||||    
T  10552328 ggttct 10552333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 17720912 - 17720831
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggc 306  Q
    ||||||||||||||||||||||||| ||||||||| ||  |||||| |||||||||| ||| |||| |||||||||| ||||    
T  17720912 ttgtgtgctggattctggtgggccgattacttttgctttgagatcgagagttggcgtatagctgcattcttgtttggctggc 17720831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 15906559 - 15906743
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||| |||||||||| | |||||| ||||||| ||| |||||||||||||| |||||  |||  ||||||  ||  ||| | ||||||||||  | |    
T  15906559 ttgtgtgttggattctggcgagccggtaacttttgtttcgagatcgggagttggtgtctaactgctttcttgtccggcgggctatggtgtttctcgggtg 15906658  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     || |  ||||  |||||||| | || |||| || ||  |||||||||||||||||| |||||||||||||||| ||||||||||    
T  15906659 gactgggggttaagggtgcccgtttggtttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttct 15906743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 24995464 - 24995419
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24995464 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 24995419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 31207431 - 31207386
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  31207431 gtctggtgggccgatcacttttgattcgagatcgggagtcagttct 31207386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 10248761 - 10248577
Alignment:
Q  225 ttgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcg 324  Q
    ||||||| ||| ||| |||||||| |||||||||| ||| ||||||||||| || |||||| |||||| |||||||| | |    ||||||||||| | |    
T  10248761 ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttgatttggtgtttctctggtg 10248662  T
Q  325 aaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
     ||||  |||  |||||| |||||| ||||  || |    | |||||| ||||||||||||||||| ||||||| ||||||||||    
T  10248661 taccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttct 10248577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 17657068 - 17657026
Alignment:
Q  367 tggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  17657068 tggtgggtcgatcacttttgattcgagatcgggagtcagttct 17657026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 9519511 - 9519556
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  9519511 gtctagtgggccgatcagttttgattcgagatcgggagtcagttct 9519556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 15821448 - 15821407
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  15821448 gtctggtgggctgatcacttttgattcgagatcgggagtcag 15821407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 409
Target Start/End: Complemental strand, 16457522 - 16457485
Alignment:
Q  372 ggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16457522 ggccgatcacttttgattcgagatcgggagtcagttct 16457485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 32066364 - 32066323
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcag 405  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  32066364 gtctggtgggccgatcacttttgattcgaaatcgggagtcag 32066323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 34389074 - 34389029
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||||||||||||||   ||||||||||    
T  34389074 gtctggtgggccgatcacttttgattcgagatcaagagtcagttct 34389029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 36630849 - 36630894
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||    
T  36630849 gtctggtgggccgatcacttttaattcgagatcgggtgtcagttct 36630894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 37986927 - 37986882
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||    
T  37986927 gtctggtgggccaatcatttttgattcgagatcgggagtcagttct 37986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 41893469 - 41893424
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||    
T  41893469 gtctggtgggccaaccacttttgattcgagatcgggagtcagttct 41893424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 33967338 - 33967370
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatc 396  Q
    |||||||||||||||||||||||||||||||||    
T  33967338 gtctggtgggccgatcacttttgattcgagatc 33967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 32945797 - 32945727
Alignment:
Q  339 ggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||| |||||||||||||  ||  || | |||||| ||||||||||||||||||||||| ||||| ||||    
T  32945797 ggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtcaattct 32945727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Original strand, 40531244 - 40531278
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcgg 398  Q
    ||||| |||||||||||||||||||||||||||||    
T  40531244 gtctgatgggccgatcacttttgattcgagatcgg 40531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 544419 - 544382
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaag 401  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  544419 gtctggtgggtcgatcactttagattcgagatcggaag 544382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 24995606 - 24995534
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatctt 295  Q
    ||||||||||||| ||  ||||||||||||  ||| | ||| ||||||||||| || |||||| |||||||||    
T  24995606 tattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctt 24995534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 19368 - 19440
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||| || |   ||||||||||||||||||||||||||||||||||||||||||||||    
T  19368 ggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttct 19440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 42234 - 42162
Alignment:
Q  337 ggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagttct 409  Q
    ||||||||||||||||||  || |   ||||||||||||||||||||||||||||||||||||||||||||||    
T  42234 ggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttct 42162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 404
Target Start/End: Original strand, 58020 - 58179
Alignment:
Q  245 ggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggcgacggtgtttctctagcgaaccgacggtttggggtgcc 344  Q
    ||||||||||||||| ||| ||||||||||| |  |||||| |||||||||||||||   |    ||||||||||| | | ||| | ||| |  ||||||    
T  58020 ggccggttacttttgcttcgagatcgggagtcgttgtctagctgcaatcttgtttggcgtgatttggtgtttctctggtgtacctagggtgtatggtgcc 58119  T
Q  345 cttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    |||| |||||| || |   || |||||||||||||||||||||||| |||||||||||||    
T  58120 cttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtca 58179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 3842 - 3885
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtcagtt 407  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  3842 gtctggtgggccgatcaattttgattcgagatcgggagtcagtt 3885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 8141 - 8180
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtc 403  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  8141 gtctggtgagccgatcacttttgattcgagataggaagtc 8180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 35840 - 35800
Alignment:
Q  364 gtctggtgggccgatcacttttgattcgagatcggaagtca 404  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  35840 gtctagtgggccgatcacttttgattcgagatcgggagtca 35800  T

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Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 35983 - 35911
Alignment:
Q  223 tattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatctt 295  Q
    ||||||||||||| ||  ||||||||||||  ||| | ||| ||||||||||| |  ||||||||||||||||    
T  35983 tattgtgtgctggctttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctagttgcaatctt 35911  T

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Target: scaffold0499 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 6429 - 6520
Alignment:
Q  215 gtcttatttattgtgtgctggattctggtgggccggttacttttgattcaagatcgggagttggcgtctagttgcaatcttgtttggttggc 306  Q
    |||||| || ||||||| || |||||| ||||| ||||||||||| ||  |||| ||||||||| |||||| |||| |||||| ||| ||||    
T  6429 gtcttactttttgtgtgttgcattctgatgggcaggttacttttgctttgagattgggagttggtgtctagctgcattcttgtctggatggc 6520  T

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