View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10962_low_4 (Length: 406)
Name: NF10962_low_4
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10962_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 15039782 - 15040198
Alignment:
| Q |
11 |
cacagagaggcaccgatttgtgaaaacaacactgcacagagtggaccaatcagtgcaacactaatcaattcacaacaaggcaatcgtacgtaacaatgga |
110 |
Q |
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| T |
15039782 |
cacaaagaggcaccgatttgtgaaaacaacactgcacagagtggaccaatcagtgcaacactaatcaattcacaacaaggcaatcgtacgtaacaatgga |
15039881 |
T |
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| Q |
111 |
aaataagttacggtggagcacttggaatagccaacaccgaaaacaaaagaataatggaagtaaacaagctaggcaaaccctagagct------------- |
197 |
Q |
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| T |
15039882 |
aaacaagttacggtggagcacttggaatagccaacaccgaaaacaaaagaataatggaagtaaacaagctaggcaaaccctagagctagatcacacaatt |
15039981 |
T |
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| Q |
198 |
------atatactttgcattatactcaatatttaaaattatcacaacacatataattgattgta-------------atatcttgtctataatgaaagat |
278 |
Q |
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| T |
15039982 |
aaatacatatactttgcattatactcaatatttaaaattatcacaacacatataattgattgtaataattgaggtttatatcttgtctatcatgaaagat |
15040081 |
T |
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| Q |
279 |
taaagatgaattaaaatagatataaacttataatgaatagctagtaaaataacgagc---tataacgaccatcaaaagacaattaataataattataatt |
375 |
Q |
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| T |
15040082 |
taaagatgaattaaaatagatataaacttataatgaatagctagtaaaataacgagctaatataacgaccatcaaaagacaattaataataattataatt |
15040181 |
T |
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| Q |
376 |
taaagagtgaggctttt |
392 |
Q |
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| T |
15040182 |
taaagaatgaggctttt |
15040198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 14499971 - 14499904
Alignment:
| Q |
308 |
ataatgaatagctagtaaaataacgagctataacgaccatcaaaagacaattaataataattataatt |
375 |
Q |
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| T |
14499971 |
ataatgaataactaataaaataatgagctattacgaccatcaagagataattaataataattataatt |
14499904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 14425691 - 14425636
Alignment:
| Q |
310 |
aatgaatagctagtaaaataacgagctataacgaccatcaaaagacaattaataat |
365 |
Q |
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| T |
14425691 |
aatgaataacttgtaaaataatgagctataacgaccatcaagagacaattaataat |
14425636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 14350704 - 14350646
Alignment:
| Q |
307 |
tataatgaatagctagtaaaataacgagctataacgaccatcaaaagacaattaataat |
365 |
Q |
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||||||||||| || ||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
14350704 |
tataatgaataacttgtaaagtaatgagctataacgaccatcaagagacaattaataat |
14350646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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