View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10962_low_5 (Length: 405)
Name: NF10962_low_5
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10962_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 35761493 - 35761863
Alignment:
| Q |
17 |
aagaagaacattgcggggttgctctacgatcgtttgacgaagatgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttg |
116 |
Q |
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| T |
35761493 |
aagaagaacattgcggggttgctctacgatcgtttgacgaagatgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttg |
35761592 |
T |
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| Q |
117 |
atcatattgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttct |
216 |
Q |
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| T |
35761593 |
atcatattgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttct |
35761692 |
T |
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| Q |
217 |
catggaatcaaaaaagagggttatcccaattttctatgatgttaaaccttcccagcttgttgttaaggacaatggtacttgtcctgttaaagagcttcga |
316 |
Q |
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| T |
35761693 |
catggaatcaaaaaagagggttatcccaattttctatgatgttaaaccttcccagcttgttgttaaggacaatggtacttgtcctgttaaagagcttcga |
35761792 |
T |
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| Q |
317 |
aggtttagtgctgcattagaggaagctaaattcactgttggattaacctttgattcttccaatagggactg |
387 |
Q |
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| T |
35761793 |
aggtttagtgctgcattagaggaagctaaattcactgttggattaacctttgattcttccaatagggactg |
35761863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 3393932 - 3393760
Alignment:
| Q |
59 |
atgggagtgagatcatttttggatagcaagaatatgaaacctggagataggttgtttgatcatattgataaaggaattctaggttgcaaagttggtgttg |
158 |
Q |
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| T |
3393932 |
atgggagtgagatcgtttttggacagtatgaacatgaaaccaggagacaaactatttcatcatatcgataaagcaattattggttgtaaggttggtgtta |
3393833 |
T |
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| Q |
159 |
ctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
231 |
Q |
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| T |
3393832 |
ccgtgttctctcctcgttattgtgactcttattattgtctccacgaactcgctcttctgatggagacaaaaaa |
3393760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 3387326 - 3387244
Alignment:
| Q |
149 |
gttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
231 |
Q |
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| T |
3387326 |
gttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacaaaaaa |
3387244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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