View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10962_low_6 (Length: 378)

Name: NF10962_low_6
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10962_low_6
NF10962_low_6
[»] chr1 (5 HSPs)
chr1 (28-88)||(23786282-23786342)
chr1 (292-337)||(14292701-14292746)
chr1 (132-197)||(24621923-24621983)
chr1 (255-302)||(14292770-14292817)
chr1 (330-360)||(14292172-14292202)
[»] chr2 (1 HSPs)
chr2 (194-295)||(23876722-23876825)
[»] chr5 (1 HSPs)
chr5 (200-295)||(5527854-5527951)
[»] chr3 (2 HSPs)
chr3 (202-295)||(7325-7420)
chr3 (198-295)||(3797971-3798070)
[»] chr4 (2 HSPs)
chr4 (206-247)||(44722759-44722800)
chr4 (255-295)||(50115308-50115348)
[»] chr7 (1 HSPs)
chr7 (255-295)||(46152137-46152177)


Alignment Details
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 23786342 - 23786282
Alignment:
Q  28 agcagcagcaccagcaccaccaccaccatatgatcttcttaaaattgaaaacattgttgca 88  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23786342 agcaacagcaccaccaccaccaccaccatataatcttcttaaaattgaaaacattgttgca 23786282  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 14292746 - 14292701
Alignment:
Q  292 aacaaaaacatagtaactcattattgtcccacgctcaaatatttta 337  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  14292746 aacaaaaacatagcaactcattattgtcccacgctcaaatatttta 14292701  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 24621923 - 24621983
Alignment:
Q  132 agggaaccagcgatcttatttatatctagggataagaaggttaaacaaatttactaacttatttat 197  Q
    ||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||    
T  24621923 agggaaccagcgatcttatttatatctagg-----gagggttaaacaaatttactaacttatttat 24621983  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 14292817 - 14292770
Alignment:
Q  255 cattggattagatatgtggtccagattaaacataaggaacaaaaacat 302  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14292817 cattggattagatatgtggtccatattaaacataaggaacacaaacat 14292770  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 360
Target Start/End: Complemental strand, 14292202 - 14292172
Alignment:
Q  330 atattttaagatccaaacttctttcttcctc 360  Q
    |||||||||||||||||||||||||||||||    
T  14292202 atattttaagatccaaacttctttcttcctc 14292172  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 23876722 - 23876825
Alignment:
Q  194 ttatggtgacggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataagg 291  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||| |||         ||||||||||||||||||||| |||||||||||||||    
T  23876722 ttatggtggcggctaggatgaggtagttgataggtccctcactggtgaggtagtaaaaaataccattggattagatatgtggtctagattaaacataagg 23876821  T
Q  292 aaca 295  Q
    ||||    
T  23876822 aaca 23876825  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 5527951 - 5527854
Alignment:
Q  200 tgacggctaggatgaggtagctaataggtccctcactagtgagggagt--nnnnnnncattggattagatatgtggtccagattaaacataaggaaca 295  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||         |||||||||| |||||||||| |||||||||||||||||||    
T  5527951 tgacggctaggatgaggtagctaataggtccctcaccgatgagggagtaaaaaatatcattggattaaatatgtggtctagattaaacataaggaaca 5527854  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 7420 - 7325
Alignment:
Q  202 acggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataaggaaca 295  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||         ||||||||||||||||||||| ||||||||||||| |||||    
T  7420 acggctaggatgaggtagctaataggtctctcactgatgatggagtaaaaaatatcattggattagatatgtggtctagattaaacataaagaaca 7325  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 3798070 - 3797971
Alignment:
Q  198 ggtgacggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataaggaaca 295  Q
    ||||||||||| ||||||||||||||||||| | ||||  |||||| |||         ||||||||||||||||||||| |||||||||||||||||||    
T  3798070 ggtgacggctatgatgaggtagctaataggtacttcaccggtgaggaagtaaaaaataccattggattagatatgtggtctagattaaacataaggaaca 3797971  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 44722759 - 44722800
Alignment:
Q  206 ctaggatgaggtagctaataggtccctcactagtgagggagt 247  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  44722759 ctaggatgaggtagctaataggtccctcaccagtgagggagt 44722800  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 50115308 - 50115348
Alignment:
Q  255 cattggattagatatgtggtccagattaaacataaggaaca 295  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  50115308 cattgaattagatatgtggtctagattaaacataaggaaca 50115348  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 46152177 - 46152137
Alignment:
Q  255 cattggattagatatgtggtccagattaaacataaggaaca 295  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  46152177 cattggattagatatgtggtctagattaaacataaggaaca 46152137  T

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