View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10962_low_8 (Length: 295)
Name: NF10962_low_8
Description: NF10962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10962_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 28586647 - 28586374
Alignment:
| Q |
2 |
gtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggta |
101 |
Q |
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||||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||| || || |||||||| |
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| T |
28586647 |
gtttcagaatacagcaacaatcctacaactttcaaatccgactttgcaactgctatgataaagatgggagatattgaacccttaaccggatcggctggag |
28586548 |
T |
|
| Q |
102 |
tcataagaagcatctgcagtgcagtcaactaattatacaatttcattcttgattaacaagaaatcaattgccaattgttttgtatatagaattttatagc |
201 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586547 |
tcataagaagcatatgcagtgcagtcaactaattatacaatttcattcttgattaacaagaaatcaattgccaattgttttgtatatagaattttatagc |
28586448 |
T |
|
| Q |
202 |
tatgagaacattgcttgaaacttctgttatcgaaaaagatgattgtattatataactcataaaaaatacattttggt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
28586447 |
tatgagaacattgcttgaaacttctgttatcgaaaaagatgagtgtatt---taactcataaaaaatacattttggt |
28586374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 28591736 - 28591583
Alignment:
| Q |
1 |
cgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591736 |
cgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggt |
28591637 |
T |
|
| Q |
101 |
atcataagaagcatctgcagtgcagtcaactaattatacaatttcattcttgat |
154 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| ||| | |||||| |
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| T |
28591636 |
atcataagaagcatctgcagtgctgtcaactaatcatacaaattcttccttgat |
28591583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28596240 - 28596380
Alignment:
| Q |
1 |
cgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || || || ||||| |
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| T |
28596240 |
cgtttctgaatacagcaaaaatcctacaacttttaagtctgactttgccgctgctatgataaagatgggagatatccaacccttaaccggatctgctgga |
28596339 |
T |
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| Q |
101 |
atcataagaagcatctgcagtgcagtcaactaattatacaa |
141 |
Q |
| |
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||||||||||| || |||||||| |||| ||||| ||||| |
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| T |
28596340 |
atcataagaagtatatgcagtgctatcaattaattttacaa |
28596380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 32494460 - 32494582
Alignment:
| Q |
1 |
cgtttctgaatacagcaacaatcctacaacttttaagtctgactttgcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| || || || ||||| |
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| T |
32494460 |
cgtttctgaatacagcaaaaatcctactacttttaagtcagactttgctgctgctatgataaagatgggagatatccaacccttaaccggatctgctgga |
32494559 |
T |
|
| Q |
101 |
atcataagaagcatctgcagtgc |
123 |
Q |
| |
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||||||||||| || |||||||| |
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|
| T |
32494560 |
atcataagaagtatatgcagtgc |
32494582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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