View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10963_low_1 (Length: 741)
Name: NF10963_low_1
Description: NF10963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10963_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 38620048 - 38620238
Alignment:
| Q |
7 |
catgcaccttgatcaaatgcctcaactgagttatcttgttgagttgcatccataaatgattcatgagacctaaactcattgtcatttgcatcaacaacaa |
106 |
Q |
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| T |
38620048 |
catgcaccttgatcaaatgcctcaactgagttatcttgttgagttgcatccataaatgattcatgagacctaaactcattgtcatttgcatcaacaacaa |
38620147 |
T |
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| Q |
107 |
cccttgcaaagttagcaacaacgagaataatgtcagattcagtcgcaatcatagcacaagtttgcacattggtaacatgatcaacgacaac |
197 |
Q |
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| T |
38620148 |
cccttgcaaagttagcaacaacgagaataatgtcagatttagtcgcaatcatagcacaagtttgcacattggtaacatgatcaacgacaac |
38620238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 302 - 516
Target Start/End: Original strand, 38620343 - 38620560
Alignment:
| Q |
302 |
caaaaatgatattatcaatacaatatcaaaaattaaatatagttatcccttataattgaaactcaaacattaatttgtcatcgttggagattagnnnnnn |
401 |
Q |
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| T |
38620343 |
caaaaatgatattattaatacaacatcaaaaattaaatatagttatcccttataattgaaactcaaacattaatttgtcatcgtcggagattagtttttt |
38620442 |
T |
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| Q |
402 |
ncttcatagtagtcactttcagccggtgttgagtcattttttgaacaagaatataatatataacacttatattattatcatatgagaaagagagaaaaaa |
501 |
Q |
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| T |
38620443 |
ccttcatagtagtcggtttcagccggtgttgagtcattttttgaacaagaatataatatataacacttatattattatcatatgagaaagagagaaaaaa |
38620542 |
T |
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| Q |
502 |
c---tagtattgcattgc |
516 |
Q |
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| T |
38620543 |
aaattagtattgcattgc |
38620560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 659 - 731
Target Start/End: Original strand, 38621530 - 38621602
Alignment:
| Q |
659 |
gtgtataatatagaatatagtgagtggcacatggcatgacaaaagcatataggactaaactaataagtctctg |
731 |
Q |
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| T |
38621530 |
gtgtataatagagaatatagtgagtggtacatggcatgacaaaagcatataggactgaactaataagtctctg |
38621602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 623
Target Start/End: Original strand, 38620626 - 38620667
Alignment:
| Q |
582 |
ttactactgaattcaaatcccaataaatgtttgcataaaagt |
623 |
Q |
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| T |
38620626 |
ttactactgaattcaaatcccaataaatgtttgcataaaagt |
38620667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 623 - 658
Target Start/End: Original strand, 38621458 - 38621493
Alignment:
| Q |
623 |
tattaacactatatattgttaatttctcaatatata |
658 |
Q |
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| T |
38621458 |
tattaacactatatattgttaatttctcaatatata |
38621493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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