View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10963_low_2 (Length: 438)

Name: NF10963_low_2
Description: NF10963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10963_low_2
NF10963_low_2
[»] chr8 (2 HSPs)
chr8 (60-420)||(44035913-44036270)
chr8 (1-62)||(44036315-44036372)
[»] chr6 (10 HSPs)
chr6 (189-292)||(31224866-31224969)
chr6 (189-303)||(31171435-31171549)
chr6 (188-305)||(31230133-31230250)
chr6 (215-303)||(30945342-30945430)
chr6 (189-325)||(30961328-30961464)
chr6 (189-303)||(31145122-31145236)
chr6 (223-292)||(31189214-31189283)
chr6 (223-292)||(31201021-31201090)
chr6 (215-295)||(30955610-30955690)
chr6 (189-291)||(30992844-30992946)
[»] chr1 (1 HSPs)
chr1 (188-262)||(49729018-49729092)


Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 60 - 420
Target Start/End: Complemental strand, 44036270 - 44035913
Alignment:
Q  60 accttggtgtcttgaaaaaacacaaccaactcttacatcataatttccattagttagctagagaagctttccaatgattttgatgaagtagaaaattctg 159  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44036270 accttggtgtcttgaaaaaacacaaccaactcttacatcat---ttccattagttagctagagaagctttccaatgattttgatgaagtagaaaattctg 44036174  T
Q  160 gtattgatcttggaggagaaaacattacaggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44036173 gtattgatcttggaggagaaaacattacaggttttggtggcatttccaaagaatccatgctaccatccaacatatcaatcactttacttattgtaggtct 44036074  T
Q  260 atgagtaggaattgtttgaatgcaccacaaaccaaccatagtcaatttcttagctatctcattttcctcattagacattaccccatcatcaagttccaaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44036073 atgagtaggaattgtttgaatgcaccacaaaccaaccatagtcaatttcttagctatctcattttcctcattagacattaccccatcatcaagttccaaa 44035974  T
Q  360 tcatttcccttctcaagcttcttatagatcaccaaatgcggaaaatataactcgctcgaac 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44035973 tcatttcccttctcaagcttcttatagatcaccaaatgcggaaaatataactcgctcgaac 44035913  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44036372 - 44036315
Alignment:
Q  1 agttactgagattaactgaaaacatacatacatatactcatatacatgatgtgtatgtaacc 62  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  44036372 agttactgagattaactgaaaacatacata----tactcatatacatgatgtgtatgtaacc 44036315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 31224969 - 31224866
Alignment:
Q  189 ggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccaca 288  Q
    |||||||||||||||||||| |||| ||||||| | || ||||| |||||||||||||| |||||||| |||| | ||||||  |||||||| |||||||    
T  31224969 ggttttggtggcatttccaacgaattcatgctaacatctaacatttcaatcactttactcattgtaggcctatcattaggaaacgtttgaatacaccaca 31224870  T
Q  289 aacc 292  Q
    ||||    
T  31224869 aacc 31224866  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 31171435 - 31171549
Alignment:
Q  189 ggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccaca 288  Q
    |||||||||||||||||||  |||| |||  || |||| ||||| |||||||||||||| ||||||||||||| | | |||| ||||||||||||||| |    
T  31171435 ggttttggtggcatttccagtgaattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccata 31171534  T
Q  289 aaccaaccatagtca 303  Q
    |||| || |||||||    
T  31171535 aacccacaatagtca 31171549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 305
Target Start/End: Complemental strand, 31230250 - 31230133
Alignment:
Q  188 aggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccac 287  Q
    |||||||||||| ||||||||| ||| | || | ||||| ||||| ||||||||| |||| ||||| ||||||| | | |||| |||||||||||||||     
T  31230250 aggttttggtggtatttccaaacaattcttgttgccttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccat 31230151  T
Q  288 aaaccaaccatagtcaat 305  Q
    ||||| || || ||||||    
T  31230150 aaacctacaatggtcaat 31230133  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 30945430 - 30945342
Alignment:
Q  215 catgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaaccaaccatagtca 303  Q
    |||||||||||||||||| ||||||||| |||| ||||| |||| || | | || | ||||||||||||||| |||||||| |||||||    
T  30945430 catgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatagtca 30945342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 325
Target Start/End: Complemental strand, 30961464 - 30961328
Alignment:
Q  189 ggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccaca 288  Q
    ||||||||||| |||||||| |||| |||| || |||| ||||| ||||  |||||||| |||||||| ||   | |||||| ||||||||| |||||||    
T  30961464 ggttttggtggtatttccaatgaattcatgttaacttctaacatttcaactactttactcattgtaggcctgccattaggaaatgtttgaatacaccaca 30961365  T
Q  289 aaccaaccatagtcaatttcttagctatctcattttc 325  Q
    |||| || || |||| | |||| || |||||||||||    
T  30961364 aacccacaatggtcattctctttgcaatctcattttc 30961328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 31145122 - 31145236
Alignment:
Q  189 ggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccaca 288  Q
    ||||| ||||| ||||| |  |||| |||| || |||| ||||| ||||| |||||||| ||||||||||||| | | |||| ||||||||||||||| |    
T  31145122 ggtttgggtggtatttcaagtgaattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttggaaatgtttgaatgcaccata 31145221  T
Q  289 aaccaaccatagtca 303  Q
    |||| || |||||||    
T  31145222 aacccacaatagtca 31145236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 31189214 - 31189283
Alignment:
Q  223 cttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaacc 292  Q
    |||| ||||| |||||||||||||| ||||||||||||| | | |||| ||||||||||||||| |||||    
T  31189214 cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacc 31189283  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 31201021 - 31201090
Alignment:
Q  223 cttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaacc 292  Q
    |||| ||||| |||||||||||||| ||||||||||||| | | |||| ||||||||||||||| |||||    
T  31201021 cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacc 31201090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 30955690 - 30955610
Alignment:
Q  215 catgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaaccaac 295  Q
    |||||||||||||||||| ||||||||| |||| ||||| |||| || | | || | ||||||||||||||| ||||||||    
T  30955690 catgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaac 30955610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 30992946 - 30992844
Alignment:
Q  189 ggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccaca 288  Q
    ||||||||||| |||||||| ||||  |||  | |||| ||||| ||||  |||||||| |||||||||||   | |||||| ||||||||| |||||||    
T  30992946 ggttttggtggtatttccaacgaattaatgtcaacttctaacatttcaactactttactcattgtaggtctgccattaggaaatgtttgaatacaccaca 30992847  T
Q  289 aac 291  Q
    |||    
T  30992846 aac 30992844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 49729092 - 49729018
Alignment:
Q  188 aggttttggtggcatttccaaagaatccatgctaccttccaacatatcaatcactttacttattgtaggtctatg 262  Q
    |||||||||||| |||| |||||| |||| ||||||||||| |||||| | ||||||||| |||| ||| |||||    
T  49729092 aggttttggtggtatttgcaaagattccaagctaccttccatcatatctaccactttactcattgcaggcctatg 49729018  T

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