View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10963_low_3 (Length: 438)
Name: NF10963_low_3
Description: NF10963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10963_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 55 - 423
Target Start/End: Original strand, 6927362 - 6927735
Alignment:
| Q |
55 |
ttgatttgcagggctatcttcagcaaaagctggtaccatagcttatgcatgtatacaggtacttgatccctttaataatttctcaggaaactaaccatat |
154 |
Q |
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| T |
6927362 |
ttgatttgcaggtctttcttcagcaaaagctggtaccatagcttatgcatgtatacaggtacttgatccctttaataatttctcaggaaactaaccatat |
6927461 |
T |
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| Q |
155 |
aactaaattattttgtctaaactttatttgttacattgaataataggttccgtttaccttgttgggagccattttgatggacaagtctggaagaaaacct |
254 |
Q |
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| T |
6927462 |
aactaaattattttgtctaaactttatttgttacattgaataataggttccgtttaccttgttgggagccattttgatggacaagtctggaagaaaacct |
6927561 |
T |
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| Q |
255 |
cttataacagtaatatttgcaaa-----cacatatcaactatttctgcatgaaaagggaatgagagatttaggtttaacaaaagtaattgttgtataatt |
349 |
Q |
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| T |
6927562 |
cttataacagtaatatttgcaaaagctttatatatcaactacgtctgcatgaaaagggaatgagagatttaggtttaacaaaagtaattgttgtataatt |
6927661 |
T |
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| Q |
350 |
gcaggtctctgctagtggaacattcttaggctgctttataaccggagttgccttctttttcaaggcaagtttat |
423 |
Q |
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| T |
6927662 |
gcaggtctctgctagtggaacattcttaggctgctttataaccggagttgccttctttttcaaggcaagtttat |
6927735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 49133708 - 49133760
Alignment:
| Q |
216 |
ttgggagccattttgatggacaagtctggaagaaaacctcttataacagtaat |
268 |
Q |
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| T |
49133708 |
ttgggagccattttgatggataaatctggaagaagaccacttataacggtaat |
49133760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 49133850 - 49133908
Alignment:
| Q |
363 |
agtggaacattcttaggctgctttataaccggagttgccttctttttcaaggcaagttt |
421 |
Q |
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| T |
49133850 |
agtggaacatttttaggttgctttatgactggaattgctttctttctcaaggcaagttt |
49133908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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