View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10963_low_4 (Length: 419)
Name: NF10963_low_4
Description: NF10963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10963_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 37135983 - 37135594
Alignment:
| Q |
16 |
aagaaactcaattgatgctcaaaaggtaaaattgaaaacacaactttctctctttatgtttataacaacaaaaagtatacaatctttaatattttaactt |
115 |
Q |
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| T |
37135983 |
aagaaactcaattgatgctcaaagggtaaaattgaaaacacaactttctctctttatgtttataacaacaaaaagtatacaatctttaatattttaactt |
37135884 |
T |
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| Q |
116 |
ttatacgattgaataaagttggaataacagaaacgtaaatgaagtttccttcctttccccttgtttcatgctacaggttctgcatattggattgttataa |
215 |
Q |
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| T |
37135883 |
ttatacgattgaataaagttggaataacagaaacgtaaatgaagtttccttcctttccccttgtttcatgctacaggttctgcatattggattgttataa |
37135784 |
T |
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| Q |
216 |
aaccaaatactagtataattatagatctgatttcatatccgaatgtggaagnnnnnnntttctagaaacataaaaattcacaattatacaattacatcac |
315 |
Q |
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| T |
37135783 |
aaccaaatactagtataattatagatctgatttcatatccgaatgtggaagaattttttttctagaaacataaaaattcacaattatacaattacatcac |
37135684 |
T |
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| Q |
316 |
aaatagaataaaaccaatcaatgctcacgttgaaaaccaaaatatataattgcactaaaaatcatgacatgatatgaacaaagtccatca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
37135683 |
aaatagaataaaaccaatcaatgctcacgttgaaaaccaaaatatataattgcactaaaaatcatgacatgatatgaacagagaccatca |
37135594 |
T |
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