View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10963_low_5 (Length: 382)

Name: NF10963_low_5
Description: NF10963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10963_low_5
NF10963_low_5
[»] chr2 (6 HSPs)
chr2 (1-365)||(42205539-42205911)
chr2 (151-292)||(42212802-42212943)
chr2 (17-85)||(18570971-18571040)
chr2 (4-54)||(12464872-12464922)
chr2 (17-74)||(14268735-14268793)
chr2 (19-49)||(18029593-18029623)
[»] chr7 (1 HSPs)
chr7 (19-77)||(2525843-2525902)
[»] chr1 (1 HSPs)
chr1 (19-85)||(19637769-19637836)
[»] chr8 (3 HSPs)
chr8 (4-54)||(10170409-10170459)
chr8 (1-51)||(37225769-37225819)
chr8 (19-51)||(40063952-40063984)
[»] chr5 (2 HSPs)
chr5 (19-81)||(9055569-9055631)
chr5 (1-76)||(28296311-28296387)
[»] chr4 (2 HSPs)
chr4 (4-54)||(2796532-2796582)
chr4 (19-51)||(19195188-19195220)
[»] chr3 (3 HSPs)
chr3 (9-74)||(18268007-18268073)
chr3 (29-85)||(23271985-23272042)
chr3 (19-51)||(33548843-33548875)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 42205911 - 42205539
Alignment:
Q  1 cacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgatatg-------caccg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||       |||||    
T  42205911 cacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaataatcatatgtgtcggtgccggacacgatatgtatctgacaccg 42205812  T
Q  93 aacacgcctaatccaaggagtaaaggtgcttcatatagaataataattnnnnnnncagggaactaactgtgaagtataggataggttggattaagatatc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  42205811 aacacgcctaatccaaggagtaaaggtgcttcatatagaataataattaaaaaagcagggaactaactgtgaagtataggataggttggattaagatatc 42205712  T
Q  193 atatcacaactagaaaaaataatcaatcaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattcagtgtgaaatggata 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205711 atatcacaactagaaaaaataatcaatcaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattcagtgtgaaatggata 42205612  T
Q  293 tcatcgtgttacaaattcacctaattaaggttttattatctatttatttacacatatttctgattgatcacat 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42205611 tcatcgtgttacaaattcacctaattaaggttttattatctatttattcacacatatttctgattgatcacat 42205539  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 42212943 - 42212802
Alignment:
Q  151 ggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatc-aaaagtgcaaataaatctgtgaaatgttc 249  Q
    ||||| |||||| |||||||||||| |||||||||||||| || | |   |   |||||| ||||||||| |||||||||||||||||||||||||||||    
T  42212943 ggaacaaactgtaaagtataggataagttggattaagatagcacagct--aggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttc 42212846  T
Q  250 atcaaacaagcaaattacacatgaatt-cagtgtgaaatggata 292  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  42212845 atcaaacaagcaaattacacatgaattgcagtgtgaaatggata 42212802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 18570971 - 18571040
Alignment:
Q  17 caacaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgtcggacacgata 85  Q
    ||||||| ||||||||||||||||||||| ||||| ||  | |||||||||||| |||||| ||||||||    
T  18570971 caacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaacacgata 18571040  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 12464922 - 12464872
Alignment:
Q  4 gacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 54  Q
    |||| ||||| ||| ||||||||||||||||||||||||||| | ||||||    
T  12464922 gacactgacacgccgacaccaataataatttgagaaaatgacatgattgaa 12464872  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 14268793 - 14268735
Alignment:
Q  17 caacaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgt 74  Q
    |||||||  |||||||||||||||||||||||||||||  | || ||||||||||||||    
T  14268793 caacaccggtaataatttgagaaaatgacttaattgaacgtaatgatatgtgtcggtgt 14268735  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 18029623 - 18029593
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaa 49  Q
    |||||||||||||||||||||||||||||||    
T  18029623 acaccaataataatttgagaaaatgacttaa 18029593  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 2525902 - 2525843
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgtcgg 77  Q
    ||||| ||||||||||||| ||||||| ||||| || || ||||||||||||||||||||    
T  2525902 acaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtcgg 2525843  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 19637769 - 19637836
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgata 85  Q
    ||||| |||||||||| |||||||||| | ||| ||  || |||||||||||||||||||||||||||    
T  19637769 acaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacacgata 19637836  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 10170459 - 10170409
Alignment:
Q  4 gacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 54  Q
    ||||||| || | |||||||||||||||||||||||||| | |||||||||    
T  10170459 gacattggcacgtcaacaccaataataatttgagaaaataaattaattgaa 10170409  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37225819 - 37225769
Alignment:
Q  1 cacgacattgacatgccaacaccaataataatttgagaaaatgacttaatt 51  Q
    |||||||| |||||| | |||||||||||||||||||||||| || |||||    
T  37225819 cacgacatagacatgtctacaccaataataatttgagaaaataacataatt 37225769  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 40063952 - 40063984
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaatt 51  Q
    ||||||||||||||||||||||||||| |||||    
T  40063952 acaccaataataatttgagaaaatgacataatt 40063984  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9055569 - 9055631
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaattgaaaatatcatatgtgtcggtgtcggacac 81  Q
    ||||||||| |||||||| |||||| | |||| |||  |||||||||||||||||||| ||||    
T  9055569 acaccaatagtaatttgaaaaaatggcataatagaatgtatcatatgtgtcggtgtcgaacac 9055631  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28296311 - 28296387
Alignment:
Q  1 cacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcg 76  Q
    |||||||| |||| | | ||||| ||||||||||||||||||||| ||||| ||  || |||||||||| |||||||    
T  28296311 cacgacatggacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcg 28296387  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 2796532 - 2796582
Alignment:
Q  4 gacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 54  Q
    ||||||||||   |||||||| ||||||||||||||||||| |||||||||    
T  2796532 gacattgacacttcaacaccattaataatttgagaaaatgaattaattgaa 2796582  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 19195220 - 19195188
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaatt 51  Q
    ||||||||||||||||||||||||||| |||||    
T  19195220 acaccaataataatttgagaaaatgacgtaatt 19195188  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 18268073 - 18268007
Alignment:
Q  9 tgacatgccaacaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgt 74  Q
    ||||||| ||||||  |||||||||||||||||||| |||||||||  | |||| ||||||||||||    
T  18268073 tgacatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgt 18268007  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 23272042 - 23271985
Alignment:
Q  29 taatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgata 85  Q
    |||||||||||| |||| ||||||||  || |||||||||||||||| ||||||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgtcggtgttggacacgata 23271985  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 33548843 - 33548875
Alignment:
Q  19 acaccaataataatttgagaaaatgacttaatt 51  Q
    ||||| |||||||||||||||||||||||||||    
T  33548843 acaccgataataatttgagaaaatgacttaatt 33548875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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