View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10963_low_7 (Length: 275)
Name: NF10963_low_7
Description: NF10963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10963_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37147623 - 37147884
Alignment:
| Q |
1 |
atttatttaaagataatccttttgttttgaatatgattttgtgtagcaaaaggtatgaaattgaagaggataaattacaagggatgtttgttggacgaag |
100 |
Q |
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| T |
37147623 |
atttatttagagataatccttttgttttgaatatgattttgtgtagctaaaggtatgaaattgaagaggataaattacaagggatgtttgttggacgaag |
37147722 |
T |
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| Q |
101 |
ttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaatcaatagcgattatcaatccattacgaaaaccatagcctg |
200 |
Q |
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| T |
37147723 |
ttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaattaatagcgattatcaatccattacgaaaaccatagcctg |
37147822 |
T |
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| Q |
201 |
aagctctgtattctctaatgttcgggtctggctattacttttttggttacatgttcaggtct |
262 |
Q |
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| T |
37147823 |
aagctctgtattctctaatgttcgggtctggctattatttttatagttacatgttcaggtct |
37147884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 7894562 - 7894431
Alignment:
| Q |
59 |
aattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagaga |
158 |
Q |
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| T |
7894562 |
aattgaagaggataaattacaataaatgtttgttggatgaaattgaaaacgaaattgtgaattaattaattaaatcaaagttgaactcttaattaaggga |
7894463 |
T |
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| Q |
159 |
aatcaatagcgattatcaatccattacgaaaa |
190 |
Q |
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| T |
7894462 |
aatcaatagcgattatcagtcgaatacgaaaa |
7894431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 35718220 - 35718141
Alignment:
| Q |
52 |
ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaa |
131 |
Q |
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| T |
35718220 |
ggtatgaaattgaagaggacaaattacaaagaatgtttgttggacaaagttgaaaacgacattgtaaattaattaattaa |
35718141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 35411082 - 35411163
Alignment:
| Q |
52 |
ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaat |
133 |
Q |
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| T |
35411082 |
ggtataaaattaaagaggataaatttcaatgaatgtttgttggacgaaattcaaaacgaaattgtgaattaattaattaaat |
35411163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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