View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10964_low_3 (Length: 316)

Name: NF10964_low_3
Description: NF10964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10964_low_3
NF10964_low_3
[»] chr3 (1 HSPs)
chr3 (242-285)||(45160363-45160406)
[»] chr7 (1 HSPs)
chr7 (242-285)||(37925488-37925531)
[»] chr8 (1 HSPs)
chr8 (242-283)||(9631557-9631598)
[»] chr4 (1 HSPs)
chr4 (245-285)||(12627212-12627252)


Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 45160363 - 45160406
Alignment:
Q  242 gagaaagtcttacctgggcacaaatacaaatgaataatgcttgg 285  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  45160363 gagaaagtcttacctaggcacaaatacaaatgaataatgcttgg 45160406  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 37925488 - 37925531
Alignment:
Q  242 gagaaagtcttacctgggcacaaatacaaatgaataatgcttgg 285  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||    
T  37925488 gagaaagtcttacctaggcacaaatacaaattaataatgtttgg 37925531  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 9631557 - 9631598
Alignment:
Q  242 gagaaagtcttacctgggcacaaatacaaatgaataatgctt 283  Q
    ||||||||||||| | |||||||||||||||||| |||||||    
T  9631557 gagaaagtcttacataggcacaaatacaaatgaaaaatgctt 9631598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 12627252 - 12627212
Alignment:
Q  245 aaagtcttacctgggcacaaatacaaatgaataatgcttgg 285  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  12627252 aaagtattacctaggcacaaatacaaatgaataatgtttgg 12627212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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