View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10964_low_5 (Length: 265)
Name: NF10964_low_5
Description: NF10964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10964_low_5 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1194390 - 1194145
Alignment:
| Q |
1 |
ttctgttccaggaattcttatatagttctgttacttcagtcttgtcattaacttgtatcttgtcaaactttcatttaagctgttagattctaagccaact |
100 |
Q |
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|||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194390 |
ttctattccaggaattcttat-tggttctgttacttcagtcttgtcattaacttgtatcttgtcaaactttcatttaagctgttagattctaagccaact |
1194292 |
T |
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| Q |
101 |
gctcatgatataattaattcaatgaataattatcacaaagttcatgaacaattttgattttctattgaacacttatcacctaaaaacacatgacagatgc |
200 |
Q |
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| T |
1194291 |
gctcatgatacaattaattcaatgaataattatcacaaagttcatgaacaattttgattttctattgaacacttatcacctaaaaacacatgacagatgc |
1194192 |
T |
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| Q |
201 |
aaaaatatcaacaccaactatgctgcagccagcaaactgcataggac |
247 |
Q |
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| T |
1194191 |
aaaaatatcaacaccaactatgctgcagccagcaaactgcataggac |
1194145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 1183364 - 1183303
Alignment:
| Q |
186 |
acacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggac |
247 |
Q |
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| T |
1183364 |
acacatgacagatgcaaaaatatcaaccccaactatgctgcagccagcaaactgcataggac |
1183303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 1183629 - 1183567
Alignment:
| Q |
30 |
gttacttcagtcttgtcattaacttgtatcttgtcaaactttcatttaagctgttagattcta |
92 |
Q |
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| T |
1183629 |
gttacttcagtcttgtcgttaagttgtatcgtgtcaaactttcatttaagctgttagattcta |
1183567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 1236369 - 1236414
Alignment:
| Q |
202 |
aaaatatcaacaccaactatgctgcagccagcaaactgcataggac |
247 |
Q |
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| T |
1236369 |
aaaatatcaacaccaaatatgctgcaaccagcaaactgcataggac |
1236414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 1188687 - 1188654
Alignment:
| Q |
132 |
atcacaaagttcatgaacaattttgattttctat |
165 |
Q |
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| T |
1188687 |
atcacaaagttcatgaacaattttgattttctat |
1188654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 20256451 - 20256510
Alignment:
| Q |
185 |
aacacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcatag |
244 |
Q |
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| T |
20256451 |
aacacatgacagatgacaaaatatcaactccaactatgttgcagccaacaaactgcatag |
20256510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 12857464 - 12857402
Alignment:
| Q |
185 |
aacacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggac |
247 |
Q |
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||||||||||| ||| ||||||||||| ||||||||||||| | ||||||| |||||||||| |
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| T |
12857464 |
aacacatgacatatgacaaaatatcaactccaactatgctgctgtcagcaaattgcataggac |
12857402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 10204159 - 10204119
Alignment:
| Q |
86 |
gattctaagccaactgctcatgatataattaattcaatgaa |
126 |
Q |
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| T |
10204159 |
gattctaagccaagtgcttatgatacaattaattcaatgaa |
10204119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 20553 - 20491
Alignment:
| Q |
185 |
aacacatgacagatgcaaaaatatcaacaccaactatgctgcagccagcaaactgcataggac |
247 |
Q |
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|||||||||||||| ||||||||||| ||||||||| | | |||||||||||| ||||||| |
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| T |
20553 |
aacacatgacagatcacaaaatatcaactccaactatgttactgccagcaaactgtataggac |
20491 |
T |
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