View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10964_low_6 (Length: 250)
Name: NF10964_low_6
Description: NF10964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10964_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1194407 - 1194646
Alignment:
| Q |
1 |
aataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagctcattcgaaagatcatcaaactaaccaactagt |
100 |
Q |
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| T |
1194407 |
aataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaagctcattcgaaagatcatcaaactaaccaactagt |
1194506 |
T |
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| Q |
101 |
ttgtttttactttgatgtcaaagtatatgcgtgtagacaaatacattcaaaaagttttccaatgcactggtcagggtaaattttgatgatccctcttttg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1194507 |
ttgtttctactttgatgtcaaagtatatgcgtgtagacaaatacattcaaaaagttttccaatgcactagtcagggtaaattttgatgatccctcttttg |
1194606 |
T |
|
| Q |
201 |
ctaaaccaggatcaagtaacacaaattacccaagttcttc |
240 |
Q |
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| T |
1194607 |
ctaaaccaggatcaaataacacaaattacccaagttcttc |
1194646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 1183732 - 1183890
Alignment:
| Q |
80 |
tcatcaaactaaccaactagtttgtttttactttgatgtcaaagtatatgcgtgta--gacaaatacattcaaaaagttttccaatgcactggtcagggt |
177 |
Q |
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| T |
1183732 |
tcatcaaactaaccagctagtttgtttttactttgatgtcaaagtagattcttgttttggca----cattcaaaaagttttccaatgcattagtcaggtt |
1183827 |
T |
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| Q |
178 |
aaattttgatgatccctcttttgctaaaccaggatcaagtaacacaaattacccaagttcttc |
240 |
Q |
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| T |
1183828 |
aaattttcatgatccctcttttgctaaaccaagatcaagtaacatagattacccaagttcttc |
1183890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 1188846 - 1188907
Alignment:
| Q |
4 |
accacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaa |
65 |
Q |
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| T |
1188846 |
accacaaaccattgatattacaaaccaaggttcaagatttctagctattgttcaaaacacaa |
1188907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 898147 - 898207
Alignment:
| Q |
143 |
acattcaaaaagttttccaatgcactggtcagggtaaattttgatgatccctcttttgcta |
203 |
Q |
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| T |
898147 |
acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta |
898207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 1183702 - 1183733
Alignment:
| Q |
4 |
accacaaactattgatattacaaactaaggtc |
35 |
Q |
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| T |
1183702 |
accacaaactattgatattacaaactaaggtc |
1183733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 5510434 - 5510378
Alignment:
| Q |
66 |
gctcattcgaaagatcatcaaactaaccaactagtttgtttttactttgatgtcaaa |
122 |
Q |
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| T |
5510434 |
gctcatttgaaagatcattaaatcaaccaactagtttgtttttgctttgatgtcaaa |
5510378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 5457081 - 5457146
Alignment:
| Q |
2 |
ataccacaaactattgatattacaaactaaggtccaagat-ttctagctattgttctaaacacaag |
66 |
Q |
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| T |
5457081 |
ataccaaaaagtactgatatgacatactaaggtccaagatcttctagctattgttcaaaacacaag |
5457146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 5510513 - 5510462
Alignment:
| Q |
16 |
tgatattacaaactaaggtccaagatttctagctattgttctaaacacaagc |
67 |
Q |
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||||||||||||| |||||||| ||||||||| |||| ||| |||||||||| |
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| T |
5510513 |
tgatattacaaaccaaggtccaggatttctagatattattcaaaacacaagc |
5510462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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