View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10964_low_7 (Length: 249)
Name: NF10964_low_7
Description: NF10964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10964_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 48846132 - 48845906
Alignment:
| Q |
13 |
tgaagaaagctaaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcaatgagaagcctcaagtgatccaagagtacgagtcgggg |
112 |
Q |
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| T |
48846132 |
tgaagaaagctaaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcaatgagaagcctcaagtgatcaaagaatacgagtcgggg |
48846033 |
T |
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| Q |
113 |
aaagccattccaaatcagatgataattggcaagttggagtcttggagagagcacttggtgccaaact-cctaggaagaaatgagaaagttgatttgatgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
48846032 |
aaagccattccaaatcagatgataattggcaagttggagtcttggagagagcacttggtgccaaaatccctaggaagaaatgagaaagttgatttgatgg |
48845933 |
T |
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| Q |
212 |
ttgtgtatgtagttggatctattttac |
238 |
Q |
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| T |
48845932 |
ttgtgtatgtagttggatctattttac |
48845906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 7016404 - 7016611
Alignment:
| Q |
24 |
aaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattcc |
123 |
Q |
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| T |
7016404 |
aaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcagtgagaagcctcaagtgatccaggagtacgagtcggggaaagccattcc |
7016503 |
T |
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| Q |
124 |
aaatcagatgataattggcaagttggagtcttggagagagcacttggtgccaaact-cctaggaagaaatgagaaagttgatttgatggttgtgtatgta |
222 |
Q |
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| T |
7016504 |
aaatcagatgataattggcaag--------ttggagagagttcttggtgccaaactccctgggaagaaatgagacagctgatttgatggttgtgtatgta |
7016595 |
T |
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| Q |
223 |
gttggatctattttac |
238 |
Q |
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| T |
7016596 |
gttggatctattttac |
7016611 |
T |
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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 17725790 - 17725623
Alignment:
| Q |
64 |
tcaaattatcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattccaaatcagatgataattggcaagttggagtcttggagagag |
163 |
Q |
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| T |
17725790 |
tcaaattatcaatgagaagcctcaagtgatccacgagtacgagtcggggaaagccattccaaatcagcatataattggcaagtt--------ggagagag |
17725699 |
T |
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| Q |
164 |
cacttggtgccaaactcc-taggaagaaatgagaaagttgatttgatggttgtgtatgtagttggatctattttac |
238 |
Q |
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| T |
17725698 |
ctcttggtgccaaactccgtgggaagaaatgagaaagttaatttgatggctgtgtatgtagttagatctattttac |
17725623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 35376439 - 35376275
Alignment:
| Q |
68 |
attatcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattccaaatcagatgataattggcaagttggagtcttggagagagcact |
167 |
Q |
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||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || |
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| T |
35376439 |
attatcaatgagaagcctcaagttatccaggagtatgagtcggggaaagccattccaaatcagcagataattggcaagtt--------ggagagagctct |
35376348 |
T |
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| Q |
168 |
tggtgccaaact-cctaggaagaaatgag-aaagttgatttgatggttgtgtatgtagttggatctattttac |
238 |
Q |
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| T |
35376347 |
tggtgccaagctgcgtgggaagaaatgagaaaagctaatttgatggctgtgtatgtagttggatctattttac |
35376275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 35376570 - 35376532
Alignment:
| Q |
29 |
aggatggacaagaagcttactcaggcacaacttgctcaa |
67 |
Q |
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| T |
35376570 |
aggacggaaaagaagcttactcaggcacaacttgctcaa |
35376532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 31044633 - 31044713
Alignment:
| Q |
71 |
atcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattccaaatcagatgataattggcaagttggag |
151 |
Q |
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| T |
31044633 |
atcaatgagaagcctcaagtgatccaagagtatgagtcagggaaagccattccaaaccagcagataattagcaagttggag |
31044713 |
T |
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