View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10964_low_8 (Length: 236)
Name: NF10964_low_8
Description: NF10964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10964_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 8721269 - 8721061
Alignment:
| Q |
10 |
ggagcagagacgcattcttccagatgggaggatatctaatttggtaacaaaagcccgtcttatgaagaaacatttttgcaaaattgaaaaacaaaagaat |
109 |
Q |
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| T |
8721269 |
ggagctgaaacgcattcttccagatgggaggatatctaaattggtaacaaaagcccgtcttatgaagaaacatttttgcaaaattgaaaaacaaaagaat |
8721170 |
T |
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| Q |
110 |
gttgagaaagaaagaatctcaagttgcaagaattgccatgacataaactgtccaatgtcaagtgaccttatagnnnnnnngctatttaaattccaaaagt |
209 |
Q |
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| T |
8721169 |
gttgagaaagaaagaatctcaagttgcaagaattgccatgacataaactgtccaatgtcaagtgaccttatagaaaaaaagctatttaaattccaaaagt |
8721070 |
T |
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| Q |
210 |
attggagga |
218 |
Q |
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||||||||| |
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| T |
8721069 |
attggagga |
8721061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 8593058 - 8592897
Alignment:
| Q |
21 |
gcattcttccagatgggaggatatctaatttggtaacaaaagcccgtcttatgaagaaacatttttgcaaaattgaaaaacaaaagaatgttgagaaaga |
120 |
Q |
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| T |
8593058 |
gcattcttccagatgagacgatatctaaattggtaacaaaagctcgtcgtgttaagaaacattttcgcaaaattgaaaaacaaaagaatgttgagaagga |
8592959 |
T |
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| Q |
121 |
aagaatctcaagttgcaagaattgccatgacataaactgtccaatgtcaagtgaccttatag |
182 |
Q |
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| T |
8592958 |
aagaatctcaagttgcatgaattgccatgacataaagtgtccaatgtcaagtgaccttatag |
8592897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 8676377 - 8676182
Alignment:
| Q |
22 |
cattcttccagatgggaggatatctaatttggtaacaaaagcccgtcttatgaagaaacatttttgcaaaattgaaaaacaaaagaatgttgagaaagaa |
121 |
Q |
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| T |
8676377 |
cattcttccagatgggaggatatcaaaatcggtaacaaaatctcgtcgtatgaagaatcatttttgcaatattgaaaaacaaaagaatgttga-aaagaa |
8676279 |
T |
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| Q |
122 |
agaatctcaagttgcaagaattgccatgacataaactgtccaatgtcaagtgaccttatagnnnnnnngctatttaaattccaaaagtattggagga |
218 |
Q |
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| T |
8676278 |
agaatctcgagttgcaagaattacaatgacatataccgtccaatgtcaagtgaccttataggaaaaaagctatttaaattccacaactattggagga |
8676182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 23436725 - 23436890
Alignment:
| Q |
50 |
ttggtaacaaaagcccg-tcttatgaagaaacatttttgcaaaattgaaaaacaaaagaatgttgagaaagaaagaatctcaagttgcaagaattgccat |
148 |
Q |
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| T |
23436725 |
ttggtaacaaaagctcggtcgtatgaagaaacatttttgcaaaattgaaaaacaaaagaatattgagaaagaaagaatcttaagttgcaagaattacaat |
23436824 |
T |
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| Q |
149 |
gacataaactgtccaatgtcaagtgaccttatagnnnnnnngctatttaaattccaaaagtattgg |
214 |
Q |
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| T |
23436825 |
gacatataccgtccgatgtcaagtgaccttatagaaaaaaagctatttaaattccaaaagtattgg |
23436890 |
T |
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