View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_high_11 (Length: 446)
Name: NF10965_high_11
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Complemental strand, 9724699 - 9724283
Alignment:
| Q |
15 |
gatcacatttctcaattattaaatatataatcatcatatgacacacaaaaggaaaacagttttgattcacatatatacatgcatggaccataagtagggt |
114 |
Q |
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| T |
9724699 |
gatcacatttctcaattattaaatatataatcatcatatgacacacaaaaggaaaacagttttgattcacatatatacatgcatggaccataagtagggt |
9724600 |
T |
|
| Q |
115 |
aagtgaagaaatattcttcaccttttcacctgttttcaattaattttcaaagctaattgttcattatgttgactaactaacagcaatcaatcattttatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9724599 |
aagtgaagaaatattcttcaccttttcacctgttttcaattaattttcaaagctaattgttcattatgttgactaactaacaacaatcaatcattttatt |
9724500 |
T |
|
| Q |
215 |
gagatgaggctccatccatactaacttagacttttgtgtttccttgcctccacgtttagttgaagtgtcacaaagtcttatattaacatttcacaactct |
314 |
Q |
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| T |
9724499 |
gagatgaggctccatccatactaacttagacttttgtgtttccttgcctccacgtttagttgaagtgtcacaaagtcttatattagcatttcacaaccct |
9724400 |
T |
|
| Q |
315 |
ttctagt-tttataaagtttttacttcaatttctacttaggtactattcatttacacaagaatctagcttaacataatggccaatggtcaaaacattata |
413 |
Q |
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| T |
9724399 |
ttctagtctttctaaagtttttacttcaatttctacttaggtactattcatttacacaagaatctagcttaacataatggccaatggtcaaaacattata |
9724300 |
T |
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| Q |
414 |
gtaacatattcaattat |
430 |
Q |
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| T |
9724299 |
gtaacatattcaattat |
9724283 |
T |
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