View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10965_high_13 (Length: 415)

Name: NF10965_high_13
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10965_high_13
NF10965_high_13
[»] chr1 (10 HSPs)
chr1 (20-400)||(24697440-24697820)
chr1 (157-211)||(41516987-41517041)
chr1 (224-266)||(48548990-48549032)
chr1 (157-260)||(3016162-3016265)
chr1 (166-265)||(7524121-7524221)
chr1 (156-211)||(36413754-36413809)
chr1 (157-274)||(18325076-18325194)
chr1 (224-265)||(213258-213299)
chr1 (157-265)||(48635169-48635277)
chr1 (226-266)||(34915135-34915175)
[»] chr2 (8 HSPs)
chr2 (157-291)||(44439253-44439388)
chr2 (226-263)||(8800677-8800714)
chr2 (157-240)||(44147953-44148037)
chr2 (155-265)||(11510951-11511061)
chr2 (224-265)||(15220838-15220879)
chr2 (225-266)||(16518846-16518887)
chr2 (157-205)||(6767674-6767722)
chr2 (225-265)||(33047559-33047599)
[»] chr4 (4 HSPs)
chr4 (157-266)||(10185193-10185304)
chr4 (160-262)||(37561440-37561543)
chr4 (224-270)||(55927742-55927788)
chr4 (101-158)||(1099767-1099824)
[»] chr6 (9 HSPs)
chr6 (226-265)||(34620955-34620994)
chr6 (226-265)||(34748392-34748431)
chr6 (157-265)||(1485123-1485231)
chr6 (225-265)||(4910976-4911016)
chr6 (226-265)||(25195343-25195382)
chr6 (224-271)||(32888928-32888975)
chr6 (200-270)||(25388119-25388189)
chr6 (158-263)||(31305826-31305932)
chr6 (158-263)||(34026596-34026705)
[»] chr7 (3 HSPs)
chr7 (224-265)||(40561735-40561776)
chr7 (231-266)||(26975332-26975367)
chr7 (226-294)||(12306792-12306860)
[»] chr8 (7 HSPs)
chr8 (226-265)||(37684474-37684513)
chr8 (161-210)||(9051094-9051143)
chr8 (179-263)||(26100125-26100210)
chr8 (225-266)||(43492213-43492254)
chr8 (203-274)||(2764437-2764509)
chr8 (225-265)||(32101141-32101181)
chr8 (225-265)||(32927960-32928000)
[»] scaffold0361 (1 HSPs)
scaffold0361 (200-265)||(14091-14157)
[»] chr3 (2 HSPs)
chr3 (224-266)||(29475361-29475403)
chr3 (160-287)||(48089645-48089772)
[»] chr5 (2 HSPs)
chr5 (101-157)||(3043102-3043158)
chr5 (157-197)||(7328685-7328725)


Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 24697820 - 24697440
Alignment:
Q  20 gataaggttgcttgatgatttggtgtatcaactgacatcttacaatcatctgtagcagaaaatgtttgaatgcaaatttagttctagagatgtagaattg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697820 gataaggttgcttgatgatttggtgtatcaactgacatcttacaatcatctgtagcagaaaatgtttgaatgcaaatttagttctagagatgtagaattg 24697721  T
Q  120 gttttgaaatatttagatgcttacgagtagaattgatttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaa 219  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24697720 gttttgaaatatttagatgcttacgagtagaattggtttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttagtctccaa 24697621  T
Q  220 tttatgttcaactcacttttacataaacgtatccaaacataaatcatattatatttaacgcacgtttagccagaaccaacttaacaaaattcaattcatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24697620 tttatgttcaactcacttttacataaacgtatccaaacataaatcatattatatttaacgcacgtttagccagaaccaacttaacaaaattcaattcgtt 24697521  T
Q  320 caaaaccggaattatattgaataacaagtacctggaaagatggtgaattggtttgtatgccctttatcaaacaattgttca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697520 caaaaccggaattatattgaataacaagtacctggaaagatggtgaattggtttgtatgccctttatcaaacaattgttca 24697440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 41516987 - 41517041
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatattta 211  Q
    |||||||||||||||| |||||||||| || |||||||||| |||||||| ||||    
T  41516987 ttgattctaacttgaagttagaatttggagtttttgcctcttcaattgattttta 41517041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 48549032 - 48548990
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatcat 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  48549032 tgttcaactcacttttacataaatgtatcaaaacataaatcat 48548990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 3016162 - 3016265
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttatg-ttcaactcacttttacataaacgtatccaa 255  Q
    ||||||||| |||||| |||||||||| ||||||||  |||  ||||||| ||||| |   |||||| | |||||||||||||||||| || ||||||||    
T  3016162 ttgattcta-cttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaa 3016260  T
Q  256 acata 260  Q
    |||||    
T  3016261 acata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 7524121 - 7524221
Alignment:
Q  166 acttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcacttttacataaacgtatccaaacataaatc 264  Q
    ||||||| |||| ||||| ||||||||  | |  ||||||| ||||| | | ||||||| |||||||||||||||||||||| || |||||||| |||||    
T  7524121 acttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaatc 7524220  T
Q  265 a 265  Q
    |    
T  7524221 a 7524221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 36413754 - 36413809
Alignment:
Q  156 tttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatattta 211  Q
    ||||||||||||||||| ||||||||||||| ||||| |||| | |||||| ||||    
T  36413754 tttgattctaacttgaagttagaatttgaagtttttggctctacgattgattttta 36413809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 18325194 - 18325076
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttatg-ttcaactcacttttacataaacgtatccaa 255  Q
    |||||| ||||||||||| |||||| | || |||||  ||| |||||||| ||||  |||  ||||||  |||||| ||||||||||| || |||||||     
T  18325194 ttgattttaacttgaaatcagaattaggagtttttgtttctacaattgatttttatcctcagatttattattcaacccacttttacatgaatgtatccat 18325095  T
Q  256 acataaatcatattatatt 274  Q
    ||||||||||  |||||||    
T  18325094 acataaatcactttatatt 18325076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 213299 - 213258
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  213299 tgttcaactcacttttacatgcatgtatccaaacataaatca 213258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 48635277 - 48635169
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcacttttacataaacgtatccaa 255  Q
    ||||||||||||| |   |||||||||||||||||| ||||  ||||||| |||||  |  ||||||| ||| ||| ||| ||||||| || ||||||||    
T  48635277 ttgattctaacttcagcctagaatttgaagcttttgtctctataattgatttttaccattgaatttatcgttaaacccac-tttacatgaatgtatccaa 48635179  T
Q  256 acataaatca 265  Q
    ||||||||||    
T  48635178 acataaatca 48635169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 34915135 - 34915175
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaatcat 266  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaacataaatcat 34915175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 291
Target Start/End: Original strand, 44439253 - 44439388
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcacttttacataaacgtatccaa 255  Q
    ||||||||||||||||  || |||||| ||||||||  |||  ||||||| || || ||| ||||||| ||||||||||||||||||||||| |||||||    
T  44439253 ttgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaa 44439352  T
Q  256 acataaatcatattatatttaacgcacgtttagcca 291  Q
    ||||||||||  ||| ||||||| ||| | ||||||    
T  44439353 acataaatcactttacatttaactcacttatagcca 44439388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 8800714 - 8800677
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaat 263  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8800714 ttcaactcacttttacatgaacgtatccaaacataaat 8800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 44148037 - 44147953
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcactttta 240  Q
    |||||| ||||||||| ||||| |||  |||||||  ||| ||||||||| |||||| || ||||||| ||||||||||||||||    
T  44148037 ttgattataacttgaagttagagtttagagcttttatctccgcaattgatttttactttcaaatttattgttcaactcactttta 44147953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 11510951 - 11511061
Alignment:
Q  155 atttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaattta-tgttcaactcacttttacataaacgtatcc 253  Q
    ||||||||||| ||||||  ||||||||| || |||||||||| ||||| || ||||  ||| |||||| |||||||| |||||||| || || ||| |     
T  11510951 atttgattctatcttgaagctagaatttggagtttttgcctctacaatttat-tttaacctcaaatttattgttcaacccacttttatatgaatgtagct 11511049  T
Q  254 aaacataaatca 265  Q
    ||||||||||||    
T  11511050 aaacataaatca 11511061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 15220879 - 15220838
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||| |||| || ||||||||||||||||||    
T  15220879 tgttcaactcactttaacatgaatgtatccaaacataaatca 15220838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 16518846 - 16518887
Alignment:
Q  225 gttcaactcacttttacataaacgtatccaaacataaatcat 266  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  16518846 gttcaactcacttttacatgaatgtatccaaacacaaatcat 16518887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 6767674 - 6767722
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattga 205  Q
    ||||||||||||||||  ||||||||| ||||||||| ||| |||||||    
T  6767674 ttgattctaacttgaagctagaatttggagcttttgcttctacaattga 6767722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 33047599 - 33047559
Alignment:
Q  225 gttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||| |||||||||||||||| ||||||||||| ||||||    
T  33047599 gttcacctcacttttacataaatgtatccaaacacaaatca 33047559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 10185193 - 10185304
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaattta-tgttcaactcacttttacataaacgtatcc-a 254  Q
    ||||||||||||||||  ||||| ||||||||||||  |||  ||||||| ||||| ||| |||||| |||| ||||||||||||||| || |||||| |    
T  10185193 ttgattctaacttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatccaa 10185292  T
Q  255 aacataaatcat 266  Q
    ||||||||||||    
T  10185293 aacataaatcat 10185304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 37561440 - 37561543
Alignment:
Q  160 attctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcacttttacataaacgtatccaaaca 258  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||  ||||  ||| ||||||| |||||||  |||||||  |||| |||| ||||||    
T  37561440 attctgacttgaaattagaatttgaagcttttgcctctacaattgaattttaacctcaaatttatcgttcaacctacttttatgtaaatgtattcaaaca 37561539  T
Q  259 taaa 262  Q
    ||||    
T  37561540 taaa 37561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 55927788 - 55927742
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatcatatta 270  Q
    ||||||| |||||||||||| || |||||||||||||||||| ||||    
T  55927788 tgttcaagtcacttttacatgaatgtatccaaacataaatcacatta 55927742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 1099767 - 1099824
Alignment:
Q  101 ttctagagatgtagaattggttttgaaatatttagatgcttacgagtagaattgattt 158  Q
    ||||||||||| ||||||| ||||||||||||| | ||||  |||| |||||||||||    
T  1099767 ttctagagatgcagaattgattttgaaatatttggttgctctcgagcagaattgattt 1099824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 34620955 - 34620994
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  34620955 ttcaactcacttttacataaatgtatccaaacataaatca 34620994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 34748392 - 34748431
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  34748392 ttcaactcacttttacataaatgtatccaaacataaatca 34748431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 1485231 - 1485123
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcacttttacataaacgtatccaa 255  Q
    ||||||||| ||||||  ||||| ||| ||||||||  |||  ||||||| || || ||| ||||||| |||||||||||||||||||||  ||||||||    
T  1485231 ttgattcta-cttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtatccaa 1485133  T
Q  256 acataaatca 265  Q
    || |||||||    
T  1485132 acgtaaatca 1485123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 4910976 - 4911016
Alignment:
Q  225 gttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  4910976 gttcgactcacttttacataaatgtatccaaacataaatca 4911016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 25195382 - 25195343
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  25195382 ttcaactcacttttacataaatgtatccaaacacaaatca 25195343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 32888975 - 32888928
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatcatattat 271  Q
    |||||||||||||||||||||||  ||| |||||||||||||| ||||    
T  32888975 tgttcaactcacttttacataaatatattcaaacataaatcattttat 32888928  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 25388119 - 25388189
Alignment:
Q  200 aattgatatttactctccaatttatgttcaactcacttttacataaacgtatccaaacataaatcatatta 270  Q
    ||||||| || || ||| |||||||  ||||||||||||||||||||  ||||||||  ||||||||||||    
T  25388119 aattgattttgacactcaaatttattgtcaactcacttttacataaatatatccaaatgtaaatcatatta 25388189  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 31305932 - 31305826
Alignment:
Q  158 tgattctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaatttat-gttcaactcacttttacataaacgtatccaaa 256  Q
    |||||||||||||||  || || ||| ||||||||  |||  ||||||| | ||| ||| ||||||| | ||||||||||||||||| ||  ||||||||    
T  31305932 tgattctaacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaa 31305833  T
Q  257 cataaat 263  Q
    |||||||    
T  31305832 cataaat 31305826  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 34026705 - 34026596
Alignment:
Q  158 tgattctaacttgaaattagaatttgaagctttt-gcctctgcaattgatatttactctccaattta-tgttcaactcacttttacat--aaacgtatcc 253  Q
    ||||||||||||||| |||||||||||| ||||| || ||| |||||||| ||||| ||  |||| | | ||||||||| ||||||||  | ||| ||||    
T  34026705 tgattctaacttgaatttagaatttgaaacttttagcttctacaattgatttttacacttaaattaattattcaactcatttttacatgaatacgcatcc 34026606  T
Q  254 aaacataaat 263  Q
    ||||||||||    
T  34026605 aaacataaat 34026596  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 40561776 - 40561735
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  40561776 tgttcaactcacttttacatgaatgtatccaaacataaatca 40561735  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 266
Target Start/End: Complemental strand, 26975367 - 26975332
Alignment:
Q  231 ctcacttttacataaacgtatccaaacataaatcat 266  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26975367 ctcacttttacataaacgtattcaaacataaatcat 26975332  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 12306792 - 12306860
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaatcatattatatttaacgcacgtttagccagaa 294  Q
    |||||||||||||||||| ||  || ||||||||||||||  |||| || ||| ||| |||||||||||    
T  12306792 ttcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccagaa 12306860  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 37684474 - 37684513
Alignment:
Q  226 ttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  37684474 ttcaactcacttttacataaatgtatccaaacacaaatca 37684513  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 9051094 - 9051143
Alignment:
Q  161 ttctaacttgaaattagaatttgaagcttttgcctctgcaattgatattt 210  Q
    ||||||||||||| ||||||||| || |||||||||  ||||||||||||    
T  9051094 ttctaacttgaaactagaatttggagtttttgcctcaacaattgatattt 9051143  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 26100210 - 26100125
Alignment:
Q  179 atttgaagcttttgcctctgcaattgatatttactctccaatttatg-ttcaactcacttttacataaacgtatccaaacataaat 263  Q
    ||||| ||||||||  |||  ||||||| ||||| | | |||||||| ||||||||||||||||||||| | ||||||||| ||||    
T  26100210 atttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaat 26100125  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 43492254 - 43492213
Alignment:
Q  225 gttcaactcacttttacataaacgtatccaaacataaatcat 266  Q
    |||||||| |||||||||| || |||||||||||||||||||    
T  43492254 gttcaacttacttttacatgaatgtatccaaacataaatcat 43492213  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 2764509 - 2764437
Alignment:
Q  203 tgatatttactctccaatttatg-ttcaactcacttttacataaacgtatccaaacataaatcatattatatt 274  Q
    |||| |||||| || |||||||| |||||||||||||||| | || ||||||||| ||||||||  |||||||    
T  2764509 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatatt 2764437  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 32101141 - 32101181
Alignment:
Q  225 gttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    |||||||||||||||||||||| ||||||| ||| ||||||    
T  32101141 gttcaactcacttttacataaatgtatccacacacaaatca 32101181  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 32927960 - 32928000
Alignment:
Q  225 gttcaactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||||||||||||||| || ||||||||||| ||||||    
T  32927960 gttcaactcacttttacatgaatgtatccaaacacaaatca 32928000  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 14157 - 14091
Alignment:
Q  200 aattgatatttactctccaatttatgtt-caactcacttttacataaacgtatccaaacataaatca 265  Q
    ||||||| ||||| ||| ||||||| || ||||||||||| |||| || ||||||||||||||||||    
T  14157 aattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatca 14091  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 29475403 - 29475361
Alignment:
Q  224 tgttcaactcacttttacataaacgtatccaaacataaatcat 266  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||    
T  29475403 tgttcaactcagtttgacataaacgtatcaaaacataaatcat 29475361  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 48089772 - 48089645
Alignment:
Q  160 attctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttactctccaattta-tgttcaactcacttttacataaacgtatccaaaca 258  Q
    ||||||| ||||| |||||| ||||||||||||||||| ||| |||| ||||  ||| || ||| |||||||| ||| ||||   ||| |||||||| ||    
T  48089772 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccac-tttatgcaaatgtatccaatca 48089674  T
Q  259 taaatcatattatatttaacgcacgttta 287  Q
    |||||||| ||| ||| ||| ||| ||||    
T  48089673 taaatcattttacattcaactcactttta 48089645  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 3043158 - 3043102
Alignment:
Q  101 ttctagagatgtagaattggttttgaaatatttagatgcttacgagtagaattgatt 157  Q
    |||||||| |||||||||| |||||| || ||||| |||||| || |||||||||||    
T  3043158 ttctagaggtgtagaattgattttgacatgtttagttgcttaagaatagaattgatt 3043102  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 7328725 - 7328685
Alignment:
Q  157 ttgattctaacttgaaattagaatttgaagcttttgcctct 197  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  7328725 ttgattctaacttgaagctagaatttgaaacttttgcctct 7328685  T

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