View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_high_2 (Length: 936)
Name: NF10965_high_2
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 8 - 915
Target Start/End: Original strand, 51912752 - 51913638
Alignment:
| Q |
8 |
gagcacagagcacaggcaggacacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttgg |
107 |
Q |
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| T |
51912752 |
gagcacagagcacaggcaggacacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttgg |
51912851 |
T |
|
| Q |
108 |
aaataaccggtaattagtaataattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgct |
207 |
Q |
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| T |
51912852 |
aaataaccggtaattagtaataattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgct |
51912951 |
T |
|
| Q |
208 |
ttttcccct-ggtttactgcacgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactgactca |
306 |
Q |
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| T |
51912952 |
ttttccccttggtttactgcacgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactaactca |
51913051 |
T |
|
| Q |
307 |
agttacgttcatctcttcctttcatgaatttgcacgcttaaattttctagtgtaaacttggaaattgtagaataaaaatttgacacaattttaaaacata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51913052 |
agttacgttcatctcttcctttcatgaatttgcacgcttaaattttctagtgtaaacttggaaattgtagaataaaaatttgacacaattctaaaacata |
51913151 |
T |
|
| Q |
407 |
atctaatcgtacttggtgcatagaattatgttatgtcatagcctgctaggttacactatcattaacgtnnnnnnnnnnnnnnnnngtcttgttacattag |
506 |
Q |
| |
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| T |
51913152 |
ctctaatcgtacttggtgcatagaattatgttatgtcatagcctgctaggttacactatcattaacgt------ataataataatgtcttgttacattag |
51913245 |
T |
|
| Q |
507 |
cttttactgggtgggactaattaatctcatcataatgcaatgtcaccctttacaacgtcaacaacatcccacagctccaaacagctgctttctttctgtc |
606 |
Q |
| |
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| T |
51913246 |
cttttactgggtgggactaattaatctcatcataatgcaatgtcaccctttacaacgtcaa----------------caaacagctgctttctttctgtc |
51913329 |
T |
|
| Q |
607 |
gttttcttttttaaacagggctaggctactgctattgggcttaaatgatacagtaacttatccaaatcttcatagaattgtccatgtaaaagcaattggg |
706 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51913330 |
gttttcttttttaaatagggctaggctactgctattgggcttaaatgatacagtaacttatccaaatcttcatagaattgtccatgtaaaagcaattggg |
51913429 |
T |
|
| Q |
707 |
ctcctaacttggtgttgtttgttgctccacgtaatactgccaaattcagacgtaaccgaatcatcaacaatatccttgtttgatataaacttaaccatat |
806 |
Q |
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| T |
51913430 |
ctcctaacttggtgttgtttgttgctccacgtaatactgccaaattcagacgtaaccgaatcatcaacaatatccttgtttgatataaacttaaccatat |
51913529 |
T |
|
| Q |
807 |
atgtttgcctttcaccaacttgctcaaaaaccagcttggtaggattcacaattatccccaccgtggatggcccactaacagctacatcataaacagattt |
906 |
Q |
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| T |
51913530 |
atgtttgcctttcaccaacttgctcaaaaaccagcttggtaggattcacaattatccccaccgtagatggcccactaacagctacatcataaacagattc |
51913629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 749
Target Start/End: Complemental strand, 26170383 - 26170322
Alignment:
| Q |
687 |
tccatgtaaaagcaattgggctcctaacttggtgttgtttgttgctccacgtaatactgccaa |
749 |
Q |
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|||||||||||||||||| |||| || |||||| |||||||||| ||||| |||||||||||| |
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| T |
26170383 |
tccatgtaaaagcaattgagctc-taccttggttttgtttgttgatccacctaatactgccaa |
26170322 |
T |
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