View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_high_3 (Length: 775)
Name: NF10965_high_3
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 11 - 690
Target Start/End: Original strand, 44379484 - 44380164
Alignment:
| Q |
11 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
110 |
Q |
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| T |
44379484 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
44379583 |
T |
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| Q |
111 |
tcaacaaaagggtgnnnnnnntaaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
210 |
Q |
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| T |
44379584 |
tcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
44379683 |
T |
|
| Q |
211 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379684 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
44379783 |
T |
|
| Q |
311 |
cattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacattcagaaacacaatcacatgaatct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379784 |
cattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacattcagaaacacaatcacatgaatct |
44379883 |
T |
|
| Q |
411 |
tcaaaaccctcttcaaaaacaactcttatctgtctctgtcatctcctataaaacacagaacac-actttgcattaannnnnnnnnnnnnnnngctcagaa |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
44379884 |
tcaaaaccctcttcaaaaacaactcttatctgtctctgtcatctcctataaaacacagaacacaactttgcattaaacacacacacacacacgctcagaa |
44379983 |
T |
|
| Q |
510 |
acacatcacaggaaaaaaccacctcacataactatacatagtactcaaacaatgtcagagacagaagaaaatattgaaacattaaaggagggaagtgttg |
609 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379984 |
acacatcacaggaaaaaaccacctcacgtaactatacatagtactcaaacaatgtcagagacagaagaaaatattgaaacattaaaggagggaagtgttg |
44380083 |
T |
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| Q |
610 |
gagcgtataaatgaatatgaaagagtgattcttttcttgataaaacaagttttgtaacaaatagttctttctagctgtaag |
690 |
Q |
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| T |
44380084 |
gagcgtataaatgaatatgaaagagtgattcttttcttgataaaacaagttttgtaacaaatagttctttctagctgtaag |
44380164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 756
Target Start/End: Original strand, 44380199 - 44380230
Alignment:
| Q |
725 |
ctaacagaagtgttgttcagtttagtgactga |
756 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44380199 |
ctaacagaagtgttgttcagtttagtgactga |
44380230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 28846887 - 28846937
Alignment:
| Q |
330 |
attcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaac |
380 |
Q |
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|||| |||||||||| ||||||| || ||| |||||||||||||||||||| |
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| T |
28846887 |
attcatgttatgtgaccctgcaattagtctcccattagtgtccattgaaac |
28846937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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