View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_high_4 (Length: 590)
Name: NF10965_high_4
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 41135905 - 41135344
Alignment:
| Q |
18 |
agggagaagatccatcacaagtttgtgatcccaccaatcagtttcgctttccaagttatcaatgatcacaagatacggaatgtttctcatcatttctttg |
117 |
Q |
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| T |
41135905 |
agggagaagatccatcacaagtttgtgatcccaccaatcagtttcgctttccaagttatcaatgatcacaagatacggaatgtttctcatcatttctttg |
41135806 |
T |
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| Q |
118 |
cgaactctagaaatagctgctgcttcatgctcttcgaatccttttatacttgttttctccaaactattctcaacactcacatcaacttctaaaaatgacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135805 |
cgaactctagaaatagctgctgcttcatgctcttcgaatccttttatacttgttttctccaaactattctcaacactcacatcaacttctaaaaatgacc |
41135706 |
T |
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| Q |
218 |
tgaggtttagatagttttgctttatatacctactctcccctcctatccatagcaccatcttgtatctttggtgaaatctataagcaaactcgagaatgag |
317 |
Q |
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| T |
41135705 |
tgaggtttagatagttttgctttatatacctactctcccctcctatccatagcaccatcttgtatctttggtgaaatctataagcaaactcgagaatgag |
41135606 |
T |
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| Q |
318 |
ttcagttttcccaattcctgaatctcctgatacacatgcaatccctttcccatacaaaaccttcactcctcttttcttcctactatacttaccactgcgt |
417 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135605 |
ttcagtttttccaattcctgaatctcctgatacacatgcaatccctttcccatacaaaaccttcactcctcttttcttcctactatacttaccactgcgt |
41135506 |
T |
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| Q |
418 |
ttgagcctcgaacggtagtgccgctgagcaaactcaacactttgcatttcaatctctttttctgactccttccacaaaactggttctttctcctccctac |
517 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135505 |
ttgagcttcgaacggtagtgctgctgagcaaactcaacactttgcatttcaatctctttttctgactccttccacaaaactggttctttctcctccctac |
41135406 |
T |
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| Q |
518 |
tactttcatttctttcatctaacacactactcttgcccctaccaatggtcaaatgccttctt |
579 |
Q |
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| T |
41135405 |
tactttcatttctttcatctaacacactactcttgcccctaccaatggtcaaatgccttctt |
41135344 |
T |
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