View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_high_5 (Length: 533)
Name: NF10965_high_5
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 49382304 - 49381825
Alignment:
| Q |
11 |
gacatcaaactaatacacacgtaataatattttaataatttacttaatttattatagagcatatgagtactactcaagttctaaaataataatataatct |
110 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
49382304 |
gacatcaaattaatacacacgtaagaatattttaataatttacttaatttattatagaacatatgagtactactcaagttctaaaataatattataatct |
49382205 |
T |
|
| Q |
111 |
agtatatatatgagatatgttaggtacaaacgaccatatatgtttgtcaaccttggatcaccttgaaaaagctattcgatcgatatataaaaaccatttt |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49382204 |
agtatatatatgagatatgttaggtacaaacaaccatatatgtttgtcaaccttggatgaccttgaaaaagctattcgatcgatatataaaaaccatttt |
49382105 |
T |
|
| Q |
211 |
agtactgnnnnnnngtgttctttaatggcaaacacagccaaatggaggaaggtataagaatgatccaaaaatatataatattatctcctctttgcatttg |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49382104 |
agtactgaaaaaaagtgttctttaatggcaaacacagccaaatggaggaaggtataagaatgatccaaaaatatataatattatctcctctttgcatttg |
49382005 |
T |
|
| Q |
311 |
ttatgtaactttacgttacttattaaatcc---aagatacagaatgcattgcatagaagagtcgagatagaatatgagactgaatgacaaagacatcgat |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49382004 |
ttatgtaactttacgttacttattaaatccaagaagatacagaatgcattgcatagaagagtcgagatagaatatgagactgaatgacaaagacatcgat |
49381905 |
T |
|
| Q |
408 |
ggagaaattcttgcctttaattaaggtagcttgaaagagtaacgagttagcattataaaggaatgatattcaatcaatat |
487 |
Q |
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| T |
49381904 |
ggagaaattcttgcctttaattaaggtagcttgaaagagtaacgagttagcattataaaggaatgatattcaatcaatat |
49381825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 10972951 - 10972984
Alignment:
| Q |
32 |
taataatattttaataatttacttaatttattat |
65 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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| T |
10972951 |
taataatattttagtaatttacttaatttattat |
10972984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 15921286 - 15921257
Alignment:
| Q |
38 |
tattttaataatttacttaatttattatag |
67 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15921286 |
tattttaataatttacttaatttattatag |
15921257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 34442278 - 34442250
Alignment:
| Q |
37 |
atattttaataatttacttaatttattat |
65 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34442278 |
atattttaataatttacttaatttattat |
34442250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 3858110 - 3858082
Alignment:
| Q |
37 |
atattttaataatttacttaatttattat |
65 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3858110 |
atattttaataatttacttaatttattat |
3858082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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