View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10965_high_7 (Length: 499)

Name: NF10965_high_7
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10965_high_7
NF10965_high_7
[»] chr6 (9 HSPs)
chr6 (152-489)||(781005-781342)
chr6 (20-87)||(781407-781474)
chr6 (22-85)||(725634-725697)
chr6 (22-93)||(4420663-4420734)
chr6 (22-85)||(32577965-32578028)
chr6 (22-86)||(10616520-10616584)
chr6 (22-85)||(30863274-30863337)
chr6 (22-83)||(31958563-31958624)
chr6 (26-86)||(34544127-34544187)
[»] chr2 (8 HSPs)
chr2 (22-86)||(43065429-43065493)
chr2 (40-93)||(5781689-5781742)
chr2 (33-86)||(29729958-29730011)
chr2 (24-93)||(34652017-34652086)
chr2 (22-75)||(43456686-43456739)
chr2 (22-74)||(1494425-1494477)
chr2 (24-88)||(10285885-10285949)
chr2 (33-85)||(32821837-32821889)
[»] chr8 (4 HSPs)
chr8 (22-85)||(14949894-14949957)
chr8 (28-93)||(2364478-2364543)
chr8 (40-93)||(4055613-4055666)
chr8 (22-86)||(11183572-11183636)
[»] chr1 (7 HSPs)
chr1 (26-86)||(4699598-4699658)
chr1 (22-86)||(10439713-10439777)
chr1 (23-75)||(17628637-17628689)
chr1 (22-88)||(11639395-11639461)
chr1 (22-88)||(15581279-15581345)
chr1 (24-81)||(6231797-6231854)
chr1 (22-86)||(11584516-11584580)
[»] chr5 (4 HSPs)
chr5 (22-93)||(28586745-28586816)
chr5 (22-93)||(37611194-37611265)
chr5 (22-93)||(37787924-37787995)
chr5 (33-84)||(11667168-11667220)
[»] chr3 (10 HSPs)
chr3 (27-86)||(2152162-2152221)
chr3 (22-73)||(24624250-24624301)
chr3 (28-86)||(30560838-30560896)
chr3 (22-91)||(11039318-11039387)
chr3 (24-93)||(31010422-31010491)
chr3 (24-93)||(31710868-31710937)
chr3 (24-93)||(31711123-31711192)
chr3 (22-86)||(3015822-3015886)
chr3 (22-86)||(21574517-21574581)
chr3 (22-86)||(43115083-43115147)
[»] scaffold0159 (1 HSPs)
scaffold0159 (40-93)||(27021-27074)
[»] chr4 (4 HSPs)
chr4 (28-93)||(11158343-11158407)
chr4 (22-86)||(6987720-6987784)
chr4 (40-88)||(11264326-11264374)
chr4 (22-86)||(33534148-33534212)
[»] chr7 (2 HSPs)
chr7 (24-88)||(12234870-12234934)
chr7 (22-86)||(46082063-46082127)


Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 152 - 489
Target Start/End: Complemental strand, 781342 - 781005
Alignment:
Q  152 agaaatagcttatacattagtacttatacgcataggtgcttaattaaacaatatagccaaacaaggtgttattagataacagatgttgtccacgaagtta 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  781342 agaaatagcttatacattagtacttatacgcataggtgcttaattaaacaatatagccaaacaaggtgttattagataacagatattgtccacgaagtta 781243  T
Q  252 ttcttgcatgtagcagctttagtttgatgaattaccaattgaaagagacttcagtcatcgatgccaatgccactcccccaactataggtagaagagaaga 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  781242 ttcttgcatgtagcagctttagtttgatgaattaccaattgaaagagacttcagtcatcgatgccaatgccactcccccaactataggtagaagagaaga 781143  T
Q  352 aaccacccataaagtaggcatctgttcatttaggaatcaaaactgaatgtcagaaaaccaaaacatttagatatcggtcactttcccatttatgagcatc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  781142 aaccacccataaagtaggcatctgttcatttaggaatcaaaactgaatgtcagaaaaccaaaacatttagatatcggtcactttcccatttatgagcatc 781043  T
Q  452 aataacaaccgagtcattttccactatacagccttcat 489  Q
    ||||||||||||||||||||||||||||||||||||||    
T  781042 aataacaaccgagtcattttccactatacagccttcat 781005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 781474 - 781407
Alignment:
Q  20 gcagagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  781474 gcagagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctct 781407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 725634 - 725697
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctct 85  Q
    ||||||||||||||||| |||||||||||||||  ||| |||||||| |||||| |||||||||    
T  725634 agagcttatgaaaacaacttatgacatgtccgtagactattttcagcttatttccataagctct 725697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 4420734 - 4420663
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    |||||||||  |||||||||||||||||| | | | ||||||||||| |||||| |||||||||| ||||||    
T  4420734 agagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagata 4420663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 32577965 - 32578028
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctct 85  Q
    ||||||||||||||||| ||||||||||||| | | ||||||||||| |||||| ||| |||||    
T  32577965 agagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttccatatgctct 32578028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 10616520 - 10616584
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||||||| |||||| ||||||||||||||| |  ||| |||||| ||||| |||||||||||    
T  10616520 agagcttatggaaacaacttatgacatgtccgtaagttgtgttcagcttatttttataagctctc 10616584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 30863337 - 30863274
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctct 85  Q
    ||||||||||||||||| ||||||||||| | | |  |||||||||| || |||||||||||||    
T  30863337 agagcttatgaaaacaacttatgacatgtacataagttgttttcagcttacttctataagctct 30863274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 31958563 - 31958624
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagct 83  Q
    ||||||||||||||| | | ||||||||||| | | ||||||| ||| ||||||||||||||    
T  31958563 agagcttatgaaaaccattaatgacatgtccttaatctgtttttagcttatttctataagct 31958624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 34544127 - 34544187
Alignment:
Q  26 cttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||||||  ||||||||||||| | |||| |||||| | ||||||||||| |||||    
T  34544127 cttatgaaaacagtttatgacatgtccataaactattttcatcttatttctataaactctc 34544187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 43065429 - 43065493
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||| |||||| ||||||||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctc 43065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 5781742 - 5781689
Alignment:
Q  40 ttatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||||||| | | ||||||||||||| |||||| |||||||||||| ||||    
T  5781742 ttatgacatgtgcataaactgttttcagcttatttccataagctctctatgata 5781689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 29730011 - 29729958
Alignment:
Q  33 aaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||| ||||||||||||| |||| |||||||||  || ||||||||||||||    
T  29730011 aaacaacttatgacatgtccatcaattgttttcaggttacttctataagctctc 29729958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 34652017 - 34652086
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    |||||||  |||||| ||||||||||||| | | ||||||||| | |||||| |||||||||| ||||||    
T  34652017 agcttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagata 34652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 43456686 - 43456739
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttc 75  Q
    ||||||| ||||||||| | ||||||||||| | ||||||||||||| ||||||    
T  43456686 agagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttatttc 43456739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 1494425 - 1494477
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatattt 74  Q
    ||||||||||||||||  ||||||||||||| | ||||||||| ||| |||||    
T  1494425 agagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattt 1494477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10285949 - 10285885
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctcta 88  Q
    |||||||||||| || ||||||||||||| | | ||||||||| | |||||| ||||| ||||||    
T  10285949 agcttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataagttctcta 10285885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 32821889 - 32821837
Alignment:
Q  33 aaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctct 85  Q
    |||||| ||||||||||||| | | ||||||||||  ||||||||||||||||    
T  32821889 aaacaacttatgacatgtccataagctgttttcagtttatttctataagctct 32821837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 14949957 - 14949894
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctct 85  Q
    |||||||||||||| || ||||||||||||| | | ||||||||||| ||||||||||| ||||    
T  14949957 agagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctct 14949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 2364478 - 2364543
Alignment:
Q  28 tatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||||||  ||||||||||||| | || |||||||||| | |||| | |||||||||||||||    
T  2364478 tatgaaaacagtttatgacatgtccataaagtgttttcagcttttttcgacaagctctctaagata 2364543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 4055613 - 4055666
Alignment:
Q  40 ttatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||||||||| | ||||||||||||| ||||||  |||||||||| |||||    
T  4055613 ttatgacatgtccataaactgttttcagcttatttccttaagctctctgagata 4055666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 11183636 - 11183572
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||| ||||||| |||||| |||||  | | ||||||||||| |||||| ||||||||||    
T  11183636 agagcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctc 11183572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 4699598 - 4699658
Alignment:
Q  26 cttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||||||| ||||||||||| | | | ||||||| ||| |||||||||||||||||    
T  4699598 cttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctc 4699658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 10439777 - 10439713
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||||||||||||||| |||||||||||| | | ||| ||||||| |||||| |||| |||||    
T  10439777 agagcttatgaaaacaaactatgacatgtccataatctgctttcagcttatttccataaactctc 10439713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 17628689 - 17628637
Alignment:
Q  23 gagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttc 75  Q
    ||||||||| |||||| ||||||||||||| | | ||||||||||||||||||    
T  17628689 gagcttatggaaacaacttatgacatgtccataagctgttttcagcatatttc 17628637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 11639395 - 11639461
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctcta 88  Q
    ||||||||||||||||  ||||||||||||| | | ||||||| ||| |||||  ||||||||||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctcta 11639461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 15581345 - 15581279
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctcta 88  Q
    |||||| ||| |||||| ||||||||||||  | | ||||||||||| ||||||||||||| |||||    
T  15581345 agagctaatggaaacaacttatgacatgtctataagctgttttcagcctatttctataagccctcta 15581279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 6231797 - 6231854
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataag 81  Q
    |||| ||| |||||| | ||||||||||| | ||||||||||||| ||||||||||||    
T  6231797 agctcatggaaacaactaatgacatgtccataaactgttttcagcttatttctataag 6231854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 11584580 - 11584516
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||||||||||| || ||||||||||| | | ||||| ||| |||||||||  ||||||||||    
T  11584580 agagcttatgaaaataatttatgacatgttcataaactgctttaagcatattttaataagctctc 11584516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 28586745 - 28586816
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    |||||||||| ||| |  ||||||||| ||||| | ||||||||||| |||||| |||||||||||| ||||    
T  28586745 agagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggata 28586816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 37611194 - 37611265
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||||||||||||| || |||||||| | | | ||||||||||  |||||| |||||||||| ||||||    
T  37611194 agagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagata 37611265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 37787924 - 37787995
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||||||||||||| || |||||||| | | | ||||||||||  |||||| |||||||||| ||||||    
T  37787924 agagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagata 37787995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 11667220 - 11667168
Alignment:
Q  33 aaacaaattatgacatgtccgtcaactgtttt-cagcatatttctataagctc 84  Q
    ||||| |||||||||||||| | ||||||||| |||| |||||||||||||||    
T  11667220 aaacagattatgacatgtccataaactgtttttcagcttatttctataagctc 11667168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 2152162 - 2152221
Alignment:
Q  27 ttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||||||||| ||||||||||| ||| | ||||||||| | | |||||||||||||||    
T  2152162 ttatgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctctc 2152221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 24624301 - 24624250
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatt 73  Q
    ||||||||||||||||  ||||||||||||| | ||||||||||||| ||||    
T  24624301 agagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 30560838 - 30560896
Alignment:
Q  28 tatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||| | ||||||||||||  | ||||||||||| |||||||||| ||||||||    
T  30560838 tatgaaaactacttatgacatgtcgataaactgttttcaccatatttctacaagctctc 30560896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 11039318 - 11039387
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaaga 91  Q
    |||||||||| ||||| |||||||||||||| | |  |||||||||| ||| || ||||||| |||||||    
T  11039318 agagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagctatctaaga 11039387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 31010491 - 31010422
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    |||||||  |||||| ||||||||||||| | | ||||||||||| || ||| |||||||||||| ||||    
T  31010491 agcttatagaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctctatgata 31010422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 31710868 - 31710937
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||| ||||||| |||||||||| || | | ||||||||||| || ||| | |||||||||||||||    
T  31710868 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagata 31710937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 31711123 - 31711192
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||| ||||||| |||||||||| || | | ||||||||||| || ||| | |||||||||||||||    
T  31711123 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagata 31711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 3015822 - 3015886
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||||||||||| ||||||||||||| | |  |||||||| | |||||  ||||||||||    
T  3015822 agagcttatgaaaacaacttatgacatgtccataagatgttttcatcttattttaataagctctc 3015886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 21574581 - 21574517
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||||||||||| ||||||||||| | | | ||| ||| ||| |||||| ||||||||||    
T  21574581 agagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctc 21574517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 43115147 - 43115083
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||| ||||| |||||| ||||||||||||| | |  |||||||||| |||||| ||||||||||    
T  43115147 agagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctc 43115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 27074 - 27021
Alignment:
Q  40 ttatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    ||||||||||| | | ||||||||||||| |||||| |||||||||||| ||||    
T  27074 ttatgacatgtgcataaactgttttcagcttatttccataagctctctatgata 27021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 11158343 - 11158407
Alignment:
Q  28 tatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctctaagata 93  Q
    |||||||||||||| ||||||  || | ||||||||||||| |||||| | |||||||||||||||    
T  11158343 tatgaaaacaaattttgacatc-ccataaactgttttcagcttatttccacaagctctctaagata 11158407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 6987720 - 6987784
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||||||| | |||| ||||||||||||| | |||| |||||| | |||||| ||||||||||    
T  6987720 agagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctc 6987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 11264374 - 11264326
Alignment:
Q  40 ttatgacatgtccgtcaactgttttcagcatatttctataagctctcta 88  Q
    ||||||||||||| | ||||||||||| | |||||| ||||||||||||    
T  11264374 ttatgacatgtccataaactgttttcaacttatttccataagctctcta 11264326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 33534148 - 33534212
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    |||||||||||||||||||| |||||| ||| | |  |||||||||| |||||  ||||||||||    
T  33534148 agagcttatgaaaacaaattgtgacatatccataagttgttttcagcttattttcataagctctc 33534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 12234870 - 12234934
Alignment:
Q  24 agcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctcta 88  Q
    |||||||  |||||| ||||||||||||  | | ||||||||||| |||||| ||||||||||||    
T  12234870 agcttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 46082127 - 46082063
Alignment:
Q  22 agagcttatgaaaacaaattatgacatgtccgtcaactgttttcagcatatttctataagctctc 86  Q
    ||||||||||||||||| |||||||||| || | |  |||||||||| |||||  ||||||||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctc 46082063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University