View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10965_low_1 (Length: 1106)

Name: NF10965_low_1
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10965_low_1
NF10965_low_1
[»] chr3 (4 HSPs)
chr3 (384-1088)||(25517876-25518588)
chr3 (22-249)||(25516938-25517163)
chr3 (36-92)||(29100130-29100186)
chr3 (156-223)||(4386859-4386924)
[»] chr4 (10 HSPs)
chr4 (843-1097)||(27521322-27521573)
chr4 (843-1092)||(27461862-27462108)
chr4 (843-1092)||(27482001-27482247)
chr4 (840-1092)||(18985959-18986208)
chr4 (772-848)||(27461737-27461813)
chr4 (772-848)||(27481876-27481952)
chr4 (774-831)||(27521614-27521671)
chr4 (156-299)||(34670528-34670672)
chr4 (110-216)||(873467-873571)
chr4 (18-223)||(37781816-37782017)
[»] chr5 (12 HSPs)
chr5 (843-1092)||(29568361-29568616)
chr5 (843-1092)||(1758010-1758256)
chr5 (870-1092)||(29168141-29168363)
chr5 (843-1077)||(29569707-29569924)
chr5 (908-1077)||(27918574-27918743)
chr5 (923-1092)||(29425232-29425404)
chr5 (772-837)||(29166790-29166855)
chr5 (772-848)||(1757885-1757961)
chr5 (772-837)||(29425113-29425177)
chr5 (843-873)||(29425206-29425236)
chr5 (806-848)||(29568665-29568707)
chr5 (843-876)||(29166896-29166929)
[»] chr2 (2 HSPs)
chr2 (34-299)||(28770637-28770902)
chr2 (50-104)||(16388529-16388583)
[»] scaffold0016 (1 HSPs)
scaffold0016 (51-224)||(102435-102605)
[»] chr6 (2 HSPs)
chr6 (18-169)||(33721553-33721703)
chr6 (27-92)||(9036222-9036286)
[»] scaffold0076 (1 HSPs)
scaffold0076 (52-92)||(16058-16098)
[»] scaffold1444 (1 HSPs)
scaffold1444 (184-215)||(1291-1322)
[»] chr7 (1 HSPs)
chr7 (248-294)||(761356-761402)
[»] chr1 (2 HSPs)
chr1 (110-164)||(8281362-8281416)
chr1 (146-223)||(10997036-10997111)


Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 384 - 1088
Target Start/End: Original strand, 25517876 - 25518588
Alignment:
Q  384 tttcacagggttctaaggattctcccttatttctcatgtttcaaacattcacccttaaccaacctctcatttaattttcatcaaatttcaaaacctccag 483  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  25517876 tttcacagggttctaaagattctcccttatctctcatgtttcaaacattcacccttaaccaacctctcatttaattttcatcaaattccaaaacctccac 25517975  T
Q  484 ctctttatattggtttcagcacgagagaatcataatcttgtatactatgtagcattcaatgattattacaattttactctacaaaatcattagaattgag 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25517976 ctctttatattggtttcagcacgagagaatcataatcttgtatactatgtagcattcaatgattattacaattttactctacaaaatcattagaattgag 25518075  T
Q  584 ctaaaatttcaaacaatttacctttatagaatttcttaaatttcaacatataagcttgatatgcaaaattgacatgttttacaatggtaacatttcttca 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25518076 ctaaaatttcaaacaatttacctttatagaatttcttaaatttcaacatataaccttgatatgcaaaattgacatgttttacaatggtaacatttcttca 25518175  T
Q  684 taataaacaagatgagnnnnnnntattagaaaaataacaacaaaatttggatcttcttgaaagacaaattgtgcattctggattctcc--tatatactca 781  Q
    ||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  25518176 taataaacaagatgagaaaaaaatcttagaaaaataacaacaaaatttggatcttcttgaaagacaaattgtgcattctggattctcctatatatactca 25518275  T
Q  782 aaccttccctcttttttcacaactctttgccactcacacttgatttacaacaa------aaattcaaattcaacaagaatccatgttgatccctcacaaa 875  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||      |||||||||||||||||||||||||||||||||||||||||    
T  25518276 aaccttccctcttttttcacaactctttgccactcacacttactttacaacaaaaattcaaattcaaattcaacaagaatccatgttgatccctcacaaa 25518375  T
Q  876 cagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctgctc 975  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25518376 cagaaacaatccatgattattccaacatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctcctc 25518475  T
Q  976 accaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaatgctct 1075  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  25518476 accaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaatgctct 25518575  T
Q  1076 tcgccgctatgtc 1088  Q
    |||| ||| ||||    
T  25518576 tcgctgctgtgtc 25518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 25516938 - 25517163
Alignment:
Q  22 aaagtaacaaggataagaaagaagagagggaaaacaacataccaatattatttacccagttcagtccaaaaatgaccaactctgtgtgagagaacaactc 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||  || |||||||| ||||| || | |||||||||||||    
T  25516938 aaagtaacaaggataagaaagaagagagggaaaacaacacaccaatagtgtttacccagttcgatctaaaaatgatcaactttgagagagagaacaactc 25517037  T
Q  122 tctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatc 221  Q
    ||| || |  | |||||| |||| || |  ||  ||| ||||| |||||  |||||||||  |||| |||||||||||||||||||| ||||||||| ||    
T  25517038 tctaatttattgtgataagaatgataaatttaggttataagaaattagc--ttaaaagctcacaaagaacaaaccctaatttctacttatttttcaagtc 25517135  T
Q  222 acagacgctcaaaacgaaccctaaaaaa 249  Q
    ||  || |||| |  |||||||||||||    
T  25517136 acccacactcacagtgaaccctaaaaaa 25517163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 29100130 - 29100186
Alignment:
Q  36 aagaaagaagagagggaaaacaacataccaatattatttacccagttcagtccaaaa 92  Q
    |||||||||||||  |||||||||| ||||||||| |||||||||||| ||||||||    
T  29100130 aagaaagaagagaaagaaaacaacacaccaatattgtttacccagttcggtccaaaa 29100186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 4386924 - 4386859
Alignment:
Q  156 ttacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcac 223  Q
    ||||||||| |||||||  |||||||  |||| |||||| ||||||||||||||||||||||| ||||    
T  4386924 ttacaagaaattagctt--aaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcac 4386859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 843 - 1097
Target Start/End: Complemental strand, 27521573 - 27521322
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||    
T  27521573 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcacactcacaacaactctg 27521477  T
Q  943 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 1042  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  27521476 tcaaacgccgttcaccatcatcatcatctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccat 27521377  T
Q  1043 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctgctcct 1097  Q
     |||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  27521376 tacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatcct 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 843 - 1092
Target Start/End: Original strand, 27461862 - 27462108
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||| |||    
T  27461862 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcacactcacaacaacactg 27461958  T
Q  943 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 1042  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  27461959 tcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccat 27462058  T
Q  1043 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 1092  Q
     ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  27462059 tacacttcctttcagtctccgtggaaatgctcttagccgctgtgtctctg 27462108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 843 - 1092
Target Start/End: Original strand, 27482001 - 27482247
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |   ||||||||||||||||||||| |||    
T  27482001 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcct---catcatcacactcacaacaacactg 27482097  T
Q  943 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 1042  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  27482098 tcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccat 27482197  T
Q  1043 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 1092  Q
     ||| |||||||||||||||| || ||||||||| |||||| ||||||||    
T  27482198 tacaattcctttcagtctccgcgggaatgctcttagccgctgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 840 - 1092
Target Start/End: Original strand, 18985959 - 18986208
Alignment:
Q  840 caaattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaact 939  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||     
T  18985959 caaattcaacaagaatccatggtgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcaccctcacaacaaca 18986055  T
Q  940 ctgtcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgc 1039  Q
    ||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  18986056 ctgtcaaactctgttcaccatcatcatcatctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgc 18986155  T
Q  1040 catcacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 1092  Q
    ||| |||||| |||||||||||||||| ||| ||||| |||||| ||||||||    
T  18986156 cattacactttctttcagtctccgtgggaatactcttagccgctgtgtctctg 18986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 772 - 848
Target Start/End: Original strand, 27461737 - 27461813
Alignment:
Q  772 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaattcaaattcaa 848  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||||  |||||||  ||| |||||||||||    
T  27461737 tatacactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaagttcaaattcaa 27461813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 772 - 848
Target Start/End: Original strand, 27481876 - 27481952
Alignment:
Q  772 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaattcaaattcaa 848  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||  |||||||| |||  ||||||||||    
T  27481876 tatatactcaaaccatacctcttttttcataactctttgccactcacacttactttacaaccaaagctcaaattcaa 27481952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 774 - 831
Target Start/End: Complemental strand, 27521671 - 27521614
Alignment:
Q  774 tatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaa 831  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||    
T  27521671 tatactcaaaccatccctcttttttcataactctttgccactcacacttactttacaa 27521614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 34670672 - 34670528
Alignment:
Q  156 ttacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcacagacgctcaaaacgaaccctaa---aaaacac 252  Q
    ||||||||| |||||||  || ||||  |||| |||||| | |||||||||  |||||||||| ||||  || |||| || ||| |||||   |||||||    
T  34670672 ttacaagaaattagctt--aatagctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaacac 34670575  T
Q  253 taaaggaaactttatgatccttcctcaaatgagatatcactatccaa 299  Q
    ||||| |||||||  ||||||||||| |||||||| |||||| ||||    
T  34670574 taaagaaaacttttagatccttcctctaatgagatctcactacccaa 34670528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 873571 - 873467
Alignment:
Q  110 agagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactc 209  Q
    ||||| |||||||| ||||  ||||||| | |||| ||| ||||  ||||||||| ||| |||  ||||||| ||||| |||||| ||||||||||||||    
T  873571 agagagcaactctccgatccactatgattagaatgataccaataggttacaagaaattaactt--aaaagctcgcaaataacaaatcctaatttctactc 873474  T
Q  210 atttttc 216  Q
    || ||||    
T  873473 atatttc 873467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 37781816 - 37782017
Alignment:
Q  18 attcaaagtaacaaggataagaaagaagagagggaaaacaacataccaatattatttacccagttcagtccaaaaatgaccaactctgtgtgagagaaca 117  Q
    |||||||| ||||| ||||||||| || ||| | ||||||||| ||||||||| |||||||||||| ||  ||| |||||| ||| |  | ||||||  |    
T  37781816 attcaaagcaacaaagataagaaataatagaag-aaaacaacaaaccaatattgtttacccagttcggtttaaatatgacctact-tcggagagagagta 37781913  T
Q  118 actctctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttca 217  Q
    ||||||  |||  |||| |||| | || |||||| |  ||||||||| |||||  |||||| ||  |||| |||||| | |||||||||| |||||||||    
T  37781914 actctccaatccactataataaaagtgatacaaagaggttacaagaaattagc--ttaaaaactcacaaagaacaaatcttaatttctacccatttttca 37782011  T
Q  218 aatcac 223  Q
    | ||||    
T  37782012 agtcac 37782017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 843 - 1092
Target Start/End: Complemental strand, 29568616 - 29568361
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatca------cactcacaaca 936  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||      ||||||||| |    
T  29568616 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcatcatcatcacactcacaaaa 29568517  T
Q  937 actctgtcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctc 1036  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29568516 actctttcaaacgccattcaccatcatcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctc 29568417  T
Q  1037 cgccatcacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 1092  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29568416 cgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg 29568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 843 - 1092
Target Start/End: Original strand, 1758010 - 1758256
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| ||||||| |||||||    
T  1758010 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcactctcacaaaaactctg 1758106  T
Q  943 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 1042  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1758107 tcaaacgccgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccat 1758206  T
Q  1043 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 1092  Q
     |||||||||||||||||||| || ||||||||| |||||| ||||||||    
T  1758207 tacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctg 1758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 870 - 1092
Target Start/End: Original strand, 29168141 - 29168363
Alignment:
Q  870 cacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatctt 969  Q
    |||||||||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29168141 cacaaacagaaacaaagcatgattattccaacatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatctt 29168240  T
Q  970 ctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaa 1069  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||    
T  29168241 ctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaa 29168340  T
Q  1070 tgctcttcgccgctatgtctctg 1092  Q
    ||||||| || ||| ||||||||    
T  29168341 tgctcttagctgctgtgtctctg 29168363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 843 - 1077
Target Start/End: Complemental strand, 29569924 - 29569707
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 942  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||                 |||||||||||||||||    
T  29569924 attcaacaagaatccattttgatccctcacaaacacaaacaatccatgattattccaacatcatca-----------------cactcacaacaactctg 29569842  T
Q  943 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 1042  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  29569841 tcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccat 29569742  T
Q  1043 cacacttcctttcagtctccgtggtaatgctcttc 1077  Q
     ||||||||||||||||||||||| ||||||||||    
T  29569741 tacacttcctttcagtctccgtggcaatgctcttc 29569707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 908 - 1077
Target Start/End: Original strand, 27918574 - 27918743
Alignment:
Q  908 aatgcttgatcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgac 1007  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  | |    
T  27918574 aatgcttgatcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggc 27918673  T
Q  1008 gcaagcaatgtcacccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaatgctcttc 1077  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||    
T  27918674 gcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctcttc 27918743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 923 - 1092
Target Start/End: Original strand, 29425232 - 29425404
Alignment:
Q  923 tcacactcacaacaactctgtcaaacgccgttcacc---atcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtc 1019  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  29425232 tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc 29425331  T
Q  1020 acccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 1092  Q
    |  |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29425332 atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg 29425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 29166790 - 29166855
Alignment:
Q  772 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaa 837  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||    
T  29166790 tatatactccaaccttccctcttttttcataactctttgccactcacacttactttacaaccaaaa 29166855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 772 - 848
Target Start/End: Original strand, 1757885 - 1757961
Alignment:
Q  772 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaattcaaattcaa 848  Q
    |||||||||||||| ||||||||| |||| |||||||||| ||||||||||  |||||||| ||| |||||||||||    
T  1757885 tatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaa 1757961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 29425113 - 29425177
Alignment:
Q  772 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaa 837  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||||||  |||||||| ||||    
T  29425113 tatataatcaaaccttccctcttttt-cataactctttgccactcacacttactttacaaccaaaa 29425177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 843 - 873
Target Start/End: Original strand, 29425206 - 29425236
Alignment:
Q  843 attcaacaagaatccatgttgatccctcaca 873  Q
    |||||||||||||||||||||||||||||||    
T  29425206 attcaacaagaatccatgttgatccctcaca 29425236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 806 - 848
Target Start/End: Complemental strand, 29568707 - 29568665
Alignment:
Q  806 ctttgccactcacacttgatttacaacaaaaattcaaattcaa 848  Q
    |||||||||||||||||  |||||||| |||||||||||||||    
T  29568707 ctttgccactcacacttactttacaaccaaaattcaaattcaa 29568665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 876
Target Start/End: Original strand, 29166896 - 29166929
Alignment:
Q  843 attcaacaagaatccatgttgatccctcacaaac 876  Q
    |||||||||||||||||| |||||||||||||||    
T  29166896 attcaacaagaatccatgatgatccctcacaaac 29166929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 28770902 - 28770637
Alignment:
Q  34 ataagaaagaagagagggaaaacaacataccaatattatttacccagttcagtccaaaaatgaccaactctgtgtgagagaacaactctctgatcttcta 133  Q
    |||| ||||||||||  | |||||| | ||||||||| |||||| | | | ||| |||||||||| ||||||   || ||| || ||||| |||| ||||    
T  28770902 ataataaagaagagaaaggaaacaagacaccaatattttttaccta-tacggtctaaaaatgacctactctggaggatagagcagctctccgatcctcta 28770804  T
Q  134 tgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcacagacgctcaa 233  Q
     ||||| |||| |||||| |||||||||||| |||||  |||||||||  |||| ||||||| ||||||||||| |||||||||| ||| | || |||      
T  28770803 cgataagaatgatacaaagatattacaagaaattagc--ttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgc 28770706  T
Q  234 aacgaaccctaa---aaaacactaaaggaaactttatgatccttcctcaaatgagatatcactatccaa 299  Q
    || ||| |||||   |||||||||||||||||||| | |||||||  | |||||||| |||||| ||||    
T  28770705 aatgaatcctaagagaaaacactaaaggaaacttttttatccttcagctaatgagatctcactacccaa 28770637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 16388583 - 16388529
Alignment:
Q  50 ggaaaacaacataccaatattatttacccagttcagtccaaaaatgaccaactct 104  Q
    ||||||||||| ||||||||| |||||||||||  |||||||||||||| |||||    
T  16388583 ggaaaacaacacaccaatattgtttacccagtttggtccaaaaatgacctactct 16388529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 102605 - 102435
Alignment:
Q  51 gaaaacaacataccaatattatttacccagttcagtccaaaaatgaccaactctgtgtgagagaacaactctctgatcttctatgataacaatgttacaa 150  Q
    |||||| ||| ||||||||||||||||||||||  | ||||| | ||| | | ||   ||||||||||||||||||||  | ||||||| | || |||||    
T  102605 gaaaacgacacaccaatattatttacccagttcgattcaaaatt-acctagtgtggaagagagaacaactctctgatccacaatgataagagtgatacaa 102507  T
Q  151 atatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcaca 224  Q
    | |  ||||||||| ||| |||  |||||||  |||||||||||||||||||||||| |||||||||| |||||    
T  102506 agaggttacaagaaattatctt--aaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcaca 102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 33721703 - 33721553
Alignment:
Q  18 attcaaagtaacaaggataagaaagaagagagggaaaacaacataccaatattatttacccagttcagtccaaaaatgaccaactctgtgtgagagaaca 117  Q
    |||||||| ||||| ||||||| ||||  || | ||||||||| |||||||||| ||| |||||| ||||||||| ||| | ||| || |  ||||||||    
T  33721703 attcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatattacttatccagtttagtccaaaa-tgatctactatggggaagagaaca 33721605  T
Q  118 actctctgatcttctatgataacaatgttacaaatatattacaagaagttag 169  Q
    |||||||||||  ||||||||| |||  |||||| |  ||||||||| ||||    
T  33721604 actctctgatccactatgataagaattatacaaagaggttacaagaaattag 33721553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 9036222 - 9036286
Alignment:
Q  27 aacaaggataagaaagaagagagggaaaacaacataccaatattatttacccagttcagtccaaaa 92  Q
    ||||| ||||||||||||||||  |||||||||| || ||||||||||| ||||||| ||||||||    
T  9036222 aacaaagataagaaagaagagaaagaaaacaacacactaatattattta-ccagttcggtccaaaa 9036286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 16098 - 16058
Alignment:
Q  52 aaaacaacataccaatattatttacccagttcagtccaaaa 92  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  16098 aaaacaacacaccaatattatttacccagttcggtccaaaa 16058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 1291 - 1322
Alignment:
Q  184 caaaaaacaaaccctaatttctactcattttt 215  Q
    ||||||||||||||||||||||||||||||||    
T  1291 caaaaaacaaaccctaatttctactcattttt 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 761356 - 761402
Alignment:
Q  248 aacactaaaggaaactttatgatccttcctcaaatgagatatcacta 294  Q
    ||||||||| |||||||| |||||||||||| |||||||| ||||||    
T  761356 aacactaaatgaaactttttgatccttcctctaatgagatctcacta 761402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 8281362 - 8281416
Alignment:
Q  110 agagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaa 164  Q
    |||||| ||||||||||||  ||||||||| |||| ||||||||| |||||||||    
T  8281362 agagaataactctctgatccactatgataagaatgatacaaatatgttacaagaa 8281416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 10997036 - 10997111
Alignment:
Q  146 tacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcac 223  Q
    ||||||||| ||||||||| ||| |||  ||||| |  |||| ||||||||||||||||||| |||||||||| ||||    
T  10997036 tacaaatatgttacaagaaattaactt--aaaagataacaaataacaaaccctaatttctacccatttttcaagtcac 10997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University