View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10965_low_10 (Length: 447)
Name: NF10965_low_10
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 28925590 - 28926008
Alignment:
| Q |
17 |
agttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccgtgct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
28925590 |
agttttatgtttgaactaactatagctgcaaatccacttggcagctctttcgaacgtacattctgacaagattttatagttgaattcaaatttctgtgct |
28925689 |
T |
|
| Q |
117 |
ttcgaaatttgaatgcctcattgtcatccctttcttctgaactactatcagtttcttcaaaattatctacaaaatgagatgcaagaagcttctgtatgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28925690 |
ttcgaaatttgaatgcctcattgtcatccctttcttctgaactactatcagtttcttcaaaattatctacaaaatgagatgcaagaagcttctgtatgtt |
28925789 |
T |
|
| Q |
217 |
gttctttttaactgttttccgccgcctcagcaaagtttttaaatttgcatcacagattatcttctttttcttggggtcaaaaagctggtttttgtggcag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28925790 |
gttctttttaactgttttccgccgcctcagcaaagtttttaaatttgcatcacagattatcttctttttcttggggtcaaaaagctggtgtttgtggcag |
28925889 |
T |
|
| Q |
317 |
taatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28925890 |
taatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatc |
28925989 |
T |
|
| Q |
417 |
ctacaaaatcctttttctt |
435 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
28925990 |
ctacaaaatcctttttctt |
28926008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 28916355 - 28916782
Alignment:
| Q |
17 |
agttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccgtgct |
116 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
28916355 |
agttttatgtttgaactaattattcctgcaaatccacttggcagctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgct |
28916454 |
T |
|
| Q |
117 |
ttcgaaatttgaatgcctcattgtcatccctttcttctgaactact---------atcagtttcttcaaaattatctacaaaatgagatgcaagaagctt |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
28916455 |
ttcgaaatttgaatgcctcattatcatccctttcttctgaactactgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagctt |
28916554 |
T |
|
| Q |
208 |
ctgtatgatgttctttttaactgttttccgccgcctcagcaaagtttttaaatttgcatcacagatta---tcttctttttcttggggtcaaaaagctgg |
304 |
Q |
| |
|
|||||| ||||||| |||| |||| || ||| ||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
28916555 |
ttgtatgttgttcttattaattgttctctgcc---tcaacaaagttattaaatttgcatcgcagattaccatcttctttttcttggggtcaaaaagctgg |
28916651 |
T |
|
| Q |
305 |
tttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaatatttttaagaaaatctatgagacttc |
404 |
Q |
| |
|
||||| |||||||| | || || |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28916652 |
tttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttc |
28916751 |
T |
|
| Q |
405 |
ttgaaccccatcctacaaaatcctttttctt |
435 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
28916752 |
ttgaaccccatccaacaaaatcctttttctt |
28916782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 28891986 - 28892416
Alignment:
| Q |
17 |
agttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccgtgct |
116 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||| || ||| ||||||||||| |||| ||||||||||||| |||| |||| |
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|
| T |
28891986 |
agttttatgtttgaattaattatagctgcaaatccacttggctgctcttgagagagtagattctgacaaggttttgtagttgaattcaaatttctctgct |
28892085 |
T |
|
| Q |
117 |
ttcgaaatttgaatgcctcattgtcat---ccctttcttctgaactact---------atcagtttcttcaaaattatctacaaaatgagatgcaagaag |
204 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28892086 |
ttggaaatttgaatgcctcattaccattatccctttcttctgaactactgataataccatcagtttcttcaaaattatctacaaaatgcgatgcaagaag |
28892185 |
T |
|
| Q |
205 |
cttctgtatgatgttctttttaactgttttccgccgcctcagcaaagtttttaaatttgcatcacagatta---tcttctttttcttggggtcaaaaagc |
301 |
Q |
| |
|
||| |||||| ||||||| ||||||| |||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
28892186 |
cttttgtatgttgttcttattaactgatttccgcc---tcagtaaagtttctaaatttgcatcacagattaccttcttctttttcttggggtcaaaaagc |
28892282 |
T |
|
| Q |
302 |
tggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaatatttttaagaaaatctatgagac |
401 |
Q |
| |
|
||||||||||||||||| | | ||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
28892283 |
tggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctacgagac |
28892382 |
T |
|
| Q |
402 |
ttcttgaaccccatcctacaaaatcctttttctt |
435 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |
|
|
| T |
28892383 |
ttcttgaaccccatccaacaaaatcttttttctt |
28892416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 28901940 - 28902368
Alignment:
| Q |
17 |
agttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccgtgct |
116 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||||| |||||||| ||||||| || ||| ||||||||||| |||| ||||||||||||| ||||| |||| |
|
|
| T |
28901940 |
agtttcatgtttgaattaattatagctgcaaatacacttggctgctcttcagagagtatattctgacaaggttttgtagttgaattcaaatttccctgct |
28902039 |
T |
|
| Q |
117 |
ttcgaaatttgaatgcctcattgtcat---ccctttcttctgaactact---------atcagtttcttcaaaattatctacaaaatgagatgcaagaag |
204 |
Q |
| |
|
|| ||||||||||||| |||| ||| ||||||||||||||||| | ||||||||| |||||||||||| ||||||| ||| ||||||| |
|
|
| T |
28902040 |
ttggaaatttgaatgctccattaccattatccctttcttctgaactagtgataataccatcagtttcctcaaaattatctgcaaaatgcgattcaagaag |
28902139 |
T |
|
| Q |
205 |
cttctgtatgatgttctttttaactgttttccgccgcctcagcaaagtttttaaatttgcatcacagatta---tcttctttttcttggggtcaaaaagc |
301 |
Q |
| |
|
|| || ||| |||| || || |||| | |||||| | || ||| || |||| ||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28902140 |
gttttgaatgttgtttttattcactgatctccgcc---ttagtaaatttcttaactttgcatcacaaattacgatcttctttttcttggggtcaaaaagc |
28902236 |
T |
|
| Q |
302 |
tggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaatatttttaagaaaatctatgagac |
401 |
Q |
| |
|
|||||| |||||||||| | ||| |||| ||||||| |||| ||| || || |||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28902237 |
tggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctaccaatacttttaagaaaatctatgagac |
28902336 |
T |
|
| Q |
402 |
ttcttgaaccccatcctacaaaatcctttttc |
433 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
28902337 |
ttcttgaaccccatccaacaaaatcctttttc |
28902368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 423
Target Start/End: Original strand, 28935438 - 28935601
Alignment:
| Q |
263 |
gcatcacagattatcttc---tttttcttggggtcaaaaagctggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctt |
359 |
Q |
| |
|
||||||||||||| |||| ||||||| | ||||||||| | |||||| | ||| ||||| ||| ||||||||||| ||| ||| | ||| |||| |
|
|
| T |
28935438 |
gcatcacagattaccttcctctttttctaagagtcaaaaaggttgtttttattgcaataatctatgattatcgaagcaacatcatgttccgtaaatgctt |
28935537 |
T |
|
| Q |
360 |
tggtcgtgtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaa |
423 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28935538 |
ttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 28935189 - 28935327
Alignment:
| Q |
20 |
tttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccgtgctttc |
119 |
Q |
| |
|
|||| ||||||||||| |||||||||| | |||||||| || | ||| ||| | || |||||||||||||| ||| || || || |||| |||||| |
|
|
| T |
28935189 |
tttaggtttgaactaattatagctgcatagccacttggaagtttttcagaaactgcactctgacaagattttgtagccgagtttaaatttctctgctttg |
28935288 |
T |
|
| Q |
120 |
gaaatttgaatgcctcattgtcatccctttcttctgaac |
158 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
28935289 |
gaaatttgaatgccttgttatcatccatttcttctgaac |
28935327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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