View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10965_low_12 (Length: 434)

Name: NF10965_low_12
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10965_low_12
NF10965_low_12
[»] chr6 (6 HSPs)
chr6 (20-421)||(11121067-11121468)
chr6 (326-417)||(1122202-1122293)
chr6 (323-412)||(18898897-18898986)
chr6 (370-412)||(19430326-19430368)
chr6 (370-412)||(22514533-22514575)
chr6 (332-405)||(22460488-22460561)
[»] chr7 (7 HSPs)
chr7 (24-419)||(21291961-21292368)
chr7 (323-412)||(9174884-9174973)
chr7 (323-412)||(21949747-21949836)
chr7 (323-412)||(6617022-6617111)
chr7 (323-412)||(46809031-46809120)
chr7 (323-412)||(34638492-34638581)
chr7 (323-412)||(42053618-42053707)
[»] chr4 (15 HSPs)
chr4 (110-319)||(37011223-37011431)
chr4 (109-420)||(29688941-29689262)
chr4 (31-285)||(29689319-29689573)
chr4 (323-404)||(27020261-27020342)
chr4 (323-412)||(36316211-36316300)
chr4 (323-412)||(36330420-36330509)
chr4 (323-412)||(34806279-34806368)
chr4 (323-412)||(39295911-39296000)
chr4 (323-412)||(5948179-5948268)
chr4 (338-406)||(53095208-53095276)
chr4 (332-415)||(33287453-33287536)
chr4 (332-419)||(37011111-37011198)
chr4 (351-420)||(1206544-1206612)
chr4 (339-408)||(34446702-34446771)
chr4 (338-417)||(32107443-32107525)
[»] chr8 (10 HSPs)
chr8 (62-324)||(3730155-3730416)
chr8 (323-420)||(18464711-18464808)
chr8 (323-421)||(31441784-31441882)
chr8 (115-257)||(11756441-11756579)
chr8 (323-412)||(12498713-12498802)
chr8 (323-412)||(18381357-18381446)
chr8 (323-412)||(39617899-39617988)
chr8 (350-405)||(22935494-22935548)
chr8 (323-412)||(6420900-6420989)
chr8 (360-411)||(15988073-15988124)
[»] chr2 (7 HSPs)
chr2 (134-274)||(12111633-12111773)
chr2 (323-406)||(4647944-4648027)
chr2 (323-419)||(19622562-19622658)
chr2 (350-412)||(30960858-30960919)
chr2 (350-412)||(7647590-7647651)
chr2 (341-411)||(17419091-17419161)
chr2 (323-412)||(40267805-40267894)
[»] chr5 (8 HSPs)
chr5 (323-412)||(40835033-40835122)
chr5 (323-406)||(1594553-1594636)
chr5 (323-412)||(5808339-5808428)
chr5 (323-412)||(16484938-16485027)
chr5 (323-412)||(39004874-39004963)
chr5 (323-412)||(39560908-39560997)
chr5 (359-412)||(641016-641069)
chr5 (323-412)||(16482489-16482578)
[»] chr3 (13 HSPs)
chr3 (323-412)||(3335962-3336051)
chr3 (338-411)||(25899153-25899226)
chr3 (323-412)||(33951682-33951771)
chr3 (332-412)||(47330053-47330133)
chr3 (323-412)||(22402398-22402487)
chr3 (323-412)||(37969168-37969257)
chr3 (335-412)||(4062400-4062477)
chr3 (315-412)||(4545679-4545776)
chr3 (323-412)||(28414066-28414155)
chr3 (338-400)||(23687689-23687750)
chr3 (338-400)||(24059926-24059987)
chr3 (351-421)||(46028310-46028379)
chr3 (351-415)||(587312-587374)
[»] chr1 (14 HSPs)
chr1 (323-412)||(2843948-2844037)
chr1 (323-412)||(38981055-38981144)
chr1 (323-412)||(2027818-2027907)
chr1 (323-412)||(18414527-18414616)
chr1 (323-412)||(28641572-28641661)
chr1 (323-412)||(32519751-32519840)
chr1 (323-412)||(45541457-45541546)
chr1 (323-412)||(49008163-49008252)
chr1 (323-412)||(8110684-8110773)
chr1 (332-412)||(24779852-24779932)
chr1 (351-421)||(32829231-32829300)
chr1 (351-421)||(5965116-5965185)
chr1 (351-421)||(15853338-15853407)
chr1 (365-421)||(36085792-36085848)
[»] scaffold0009 (1 HSPs)
scaffold0009 (323-412)||(194654-194743)
[»] scaffold0256 (1 HSPs)
scaffold0256 (323-412)||(4038-4127)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 11121067 - 11121468
Alignment:
Q  20 gactggtgctatggttggttctcgcgcttttggcaaaaaccacacgggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttc 119  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| || ||||||||| |||||||  ||||||||||    
T  11121067 gactggtgctatggttggttctcgcgctttgggaaaaaaccacacgggttggtgttattcaaatcagatctgcactttcgagttctaagcgtgtgggttc 11121166  T
Q  120 tgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtg 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||    
T  11121167 tgtcagatggcagctccatttgacaaagtattcagattgataggctagaaacggtcatacaaacttgttgtcttgtgtctcaatgagtggttcgcgggtg 11121266  T
Q  220 tattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggc 319  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  11121267 tattcgctaccgcgttggcggtcaaattcattgccattggtaaaaggttggagttcataattgtgcctaagttgtgcttgcatgatggcttgttgtgggc 11121366  T
Q  320 cagaatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgt 419  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11121367 cagaatttgctattgatcatcgcagtaaacggttggtgcgtgtggattcgttaattaccgtgttggcggtcgaatccactccccactttcaagcatctgt 11121466  T
Q  420 ct 421  Q
    ||    
T  11121467 ct 11121468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 417
Target Start/End: Original strand, 1122202 - 1122293
Alignment:
Q  326 ttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatct 417  Q
    |||||| ||||||| | | ||||| |||| ||| |||||||||  ||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  1122202 ttgctagtgatcatagtattaaaccgttgttgcgtgtggattcgctaattaccgtgttggcggtcgaatccactccccactctcaagaatct 1122293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 18898897 - 18898986
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18898897 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18898986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 19430368 - 19430326
Alignment:
Q  370 ttaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  19430368 ttaattaccgtgttggcggttgaatctactccccactctcaag 19430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 22514575 - 22514533
Alignment:
Q  370 ttaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  22514575 ttaattaccgtgttggcggttgaatctactccccactctcaag 22514533  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 22460561 - 22460488
Alignment:
Q  332 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 405  Q
    ||||| |||||| |||| ||||||||  ||| |||||  || |||||||||||||||||||||| |||||||||    
T  22460561 ttgatgatcgcattaaatggttggtgtgtgttgattcgctatttaccgtgttggcggttgaatctactccccac 22460488  T

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Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 24 - 419
Target Start/End: Original strand, 21291961 - 21292368
Alignment:
Q  24 ggtgctatggttggttctcgcgcttttggcaaaaaccacacgggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtc 123  Q
    ||||||||||||||| |||| | ||| ||||||||    ||||||||||||||||  ||||||||  ||||||||||||||  |   |||||||| ||||    
T  21291961 ggtgctatggttggtgctcgtgttttgggcaaaaattgtacgggttggtgtgatttgaatcagttatgcactttcgggttccgagcatgtgggttatgtc 21292060  T
Q  124 agatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtatt 223  Q
     |||||| ||||||||||||| || || || |||||| ||| | |||| ||| |||||||||| |||||| ||||||| ||||||||||||||||| | |    
T  21292061 ggatggccgctccatttgacggaggatccaaattgatgggccaaaaatagtcgtacaaacttgatgtcttctgtctcagtgagtggttggtgggtggact 21292160  T
Q  224 cgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccag- 322  Q
    |||| ||||||| | ||||  ||||||| ||||||||||||| |||||||||| |||| ||||||| ||||||||| ||||| ||||| ||||||| ||     
T  21292161 cgctgccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctagtttgtgcttgtatgatcgcttgatgtgggctaga 21292260  T
Q  323 -----------aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 411  Q
               |||||| | ||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||  | |||||||||||||| |||    
T  21292261 aatggctgattaatttgttgttgatcatcgcagtaaacggttggtgcgtgttaattcgttaattaccgtgttggcggtcaagtccactccccacttgcaa 21292360  T
Q  412 gcatctgt 419  Q
    ||||||||    
T  21292361 gcatctgt 21292368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 9174884 - 9174973
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||| |||||||||||||||| |||||||||| |||||    
T  9174884 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccatgttggcggttgaatcaactccccactctcaag 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 21949747 - 21949836
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  21949747 aatttgatgttgatcatagcagtaaacagttcgtgcgtgtggattttttaattaccgtgttggtggttgaatctactccccactctcaag 21949836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 6617111 - 6617022
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  6617111 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 6617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 46809120 - 46809031
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  46809120 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 46809031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 34638492 - 34638581
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  34638492 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 42053707 - 42053618
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  42053707 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 42053618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 319
Target Start/End: Complemental strand, 37011431 - 37011223
Alignment:
Q  110 gtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtgg 209  Q
    ||||||||| |||  ||||| |||||||||||| | || ||||||||||||||||||||||||||| |||||||||| ||| | |||||| | |||||||    
T  37011431 gtgtgggttttgttggatggtagctccatttgatggaggattcagattgataggctagaaatggtcgtacaaacttgatgtatggtgtcttagtgagtgg 37011332  T
Q  210 ttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggct 309  Q
    |||||| ||| |||||||| |||||||||||||  |||||||||||||||| |||| ||||| || | ||||||||||| ||||||||||  |||| |||    
T  37011331 ttggtgagtggattcgctatcgtgttggcggtcggattcattgccattggt-aaaggttggattttagacttgtgcctatgttgtgcttgtgtgatcgct 37011233  T
Q  310 tgttgtgggc 319  Q
    | ||||||||    
T  37011232 ttttgtgggc 37011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 109 - 420
Target Start/End: Complemental strand, 29689262 - 29688941
Alignment:
Q  109 tgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtg 208  Q
    |||||||||| |||| |||||| |||| |||||||| || ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| ||||||    
T  29689262 tgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtg 29689163  T
Q  209 gttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggc 308  Q
    |||||| |||| || |||||||||||||||| ||   |||||||||||||||  ||| |||||| ||| |||||||||||||||||||| | ||||   |    
T  29689162 gttggtaggtggatccgctaccgtgttggcgatc-ggttcattgccattggt-gaaggttggagctcagacttgtgcctaggttgtgctagtatgaccac 29689065  T
Q  309 ttgttgtgggccag------------aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatcc 396  Q
     ||||||||||  |            |||||| | || |||||||||||||||| |||||||  ||||||||  ||||||||||||||||||| ||| ||    
T  29689064 atgttgtgggctggaaatgactgattaatttgttgttaatcatcgcagtaaacgattggtgcgcgtggattcgctaattaccgtgttggcggtcgaaccc 29688965  T
Q  397 actccccactttcaagcatctgtc 420  Q
    ||||||||||||||||||| ||||    
T  29688964 actccccactttcaagcatttgtc 29688941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 29689573 - 29689319
Alignment:
Q  31 tggttggttctcgcgcttttggcaaaaaccacacgggttggtgtgattcaaatcagttccgcac--tttcgggttctaaatgtgtgggttctgtcagatg 128  Q
    ||||||||||||||| ||| ||||||| |  |||||||||||||||||| | |||  || ||||  |||| | |||  | |||||||||| |||| ||||    
T  29689573 tggttggttctcgcgttttgggcaaaacctgcacgggttggtgtgattcgactcaaatctgcacattttcagcttccgagtgtgtgggttatgtcggatg 29689474  T
Q  129 gcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgcta 228  Q
    || |||| |||||||| || ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| |||||||||||| |||| ||||||||    
T  29689473 gcggctctatttgacggaggattcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggattcgcta 29689374  T
Q  229 ccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgc 285  Q
    ||||||||||||||   |||||||||||||||  ||| |||||| ||| ||||||||    
T  29689373 ccgtgttggcggtc-ggttcattgccattggt-gaaggttggagctcagacttgtgc 29689319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 27020261 - 27020342
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactcccca 404  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| ||||||||    
T  27020261 aatttgatgttgatcatagcagtaaacagttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactcccca 27020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 36316211 - 36316300
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  36316211 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaag 36316300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 36330420 - 36330509
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  36330420 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaag 36330509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 34806368 - 34806279
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  ||||||||||||||||||||||||||  ||||||||| |||||    
T  34806368 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctgctccccactctcaag 34806279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 39296000 - 39295911
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  ||||||||||||||||| |||||||| |||||||||| |||||    
T  39296000 aatttgatgttgatcatagcagtaaacagttagtgtgtgtggatttgttaattaccgtgttggctgttgaatctactccccactctcaag 39295911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 5948268 - 5948179
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  5948268 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 5948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 53095208 - 53095276
Alignment:
Q  338 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 406  Q
    ||||||||||| ||||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||    
T  53095208 atcgcagtaaatggttggtgcatgtagattcgtcatttaccgtgttggtggttggatccactctccact 53095276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 33287453 - 33287536
Alignment:
Q  332 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcat 415  Q
    ||||||| ||||||||||   ||||||| |||||||  ||| ||||||||||||||||  |||||| |||||| ||||||||||    
T  33287453 ttgatcaccgcagtaaacaagtggtgcacgtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcat 33287536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 37011198 - 37011111
Alignment:
Q  332 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgt 419  Q
    |||||||||| ||||||| ||||||||| |||||||   ||||||  |||||  ||||  ||| ||||||||||||||||||||||||    
T  37011198 ttgatcatcgtagtaaacagttggtgcaggtggatttgctaattattgtgttaacggtcaaattcactccccactttcaagcatctgt 37011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 1206544 - 1206612
Alignment:
Q  351 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 420  Q
    ||||||||| ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||| ||| ||||    
T  1206544 gttggtgcacgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaaacatttgtc 1206612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 34446771 - 34446702
Alignment:
Q  339 tcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccacttt 408  Q
    ||||||||||| |||||||   |||||||| ||| |||||||||||||||| | ||||||| ||| ||||    
T  34446771 tcgcagtaaacagttggtgatcgtggattctttagttaccgtgttggcggtcggatccacttcccgcttt 34446702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 32107443 - 32107525
Alignment:
Q  338 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcg---gttgaatccactccccactttcaagcatct 417  Q
    |||||| |||| |||||||||  |||||||  ||| ||||||||||||||    ||| |||||||||||||||||||| ||||    
T  32107443 atcgcaataaatggttggtgcgagtggatttgttatttaccgtgttggcgattattggatccactccccactttcaagaatct 32107525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 324
Target Start/End: Original strand, 3730155 - 3730416
Alignment:
Q  62 cacgggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgata 161  Q
    ||||||||||||||| || | |||| ||  |||||||| ||||  |  ||||| ||| ||||| ||| ||| || |||||| | || |||  ||||||||    
T  3730155 cacgggttggtgtgactcgactcagatcttcactttcgtgttccgagcgtgtgagttatgtcaaatgacagttctatttgagggaggattttgattgata 3730254  T
Q  162 ggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggta 261  Q
     ||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||| ||||||  ||||||||||||||||     
T  3730255 tgctagaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgccattggt- 3730353  T
Q  262 aaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaa 324  Q
    |||| ||| |||||  ||||| |||||||| ||||||| ||||| ||||||||| ||||||||    
T  3730354 aaaggttgtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaa 3730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 18464711 - 18464808
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 420  Q
    |||||||  |||||||||||||||||| | ||||||  |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18464711 aatttgccgttgatcatcgcagtaaacaggtggtgcgcgtggattcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc 18464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 323 - 421
Target Start/End: Complemental strand, 31441882 - 31441784
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtct 421  Q
    |||||||| ||||| ||||||||||||| | ||||| ||||||||  ||||| || ||||||||||||||||||||||||||||  |||| ||||||||    
T  31441882 aatttgctgttgatgatcgcagtaaacgataggtgcgtgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtct 31441784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 11756579 - 11756441
Alignment:
Q  115 ggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggt 214  Q
    ||||||||| | |||||||| || |  ||||||  || ||||| ||||||||||||||| | || ||||||||||| ||    |||| ||||||||||||    
T  11756579 ggttctgtcggttggcagcttcagtcaacgaaggtttaagattaataggctagaaatggccgtataaacttgttgtttt----ctcagtgagtggttggt 11756484  T
Q  215 gggtgtattcgctaccgtgttggcggtcaaattcattgccatt 257  Q
     |||| || |||||||||||||||||||| | | |||||||||    
T  11756483 tggtggatccgctaccgtgttggcggtcagactgattgccatt 11756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 12498713 - 12498802
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  12498713 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactcctcactctcaag 12498802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 18381357 - 18381446
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18381357 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18381446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 39617899 - 39617988
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  39617899 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 39617988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 22935494 - 22935548
Alignment:
Q  350 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 405  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||    
T  22935494 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatccactccccac 22935548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 6420989 - 6420900
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| |||  ||||| |||||    
T  6420989 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctactttccactctcaag 6420900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 15988124 - 15988073
Alignment:
Q  360 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 411  Q
    |||||||||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  15988124 tgtggattctctaattaccgtgttggcggtcgaattcactccccactctcaa 15988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 274
Target Start/End: Complemental strand, 12111773 - 12111633
Alignment:
Q  134 tccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtg 233  Q
    ||||||||||| || | | ||||||||||||||||||||| | |  ||||||| ||| ||||||||||  ||||| ||||| |||| ||||||||| |||    
T  12111773 tccatttgacggaggagtaagattgataggctagaaatggccgtttaaacttgatgttttgtgtctcagcgagtgattggttggtggattcgctacggtg 12111674  T
Q  234 ttggcggtcaaattcattgccattggtaaaagtttggagtt 274  Q
    ||||| |||| ||| ||| ||||| ||||||| ||||||||    
T  12111673 ttggcagtcagatttattaccatttgtaaaaggttggagtt 12111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 4647944 - 4648027
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 406  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  4647944 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccccact 4648027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 19622658 - 19622562
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgt 419  Q
    |||||||||| ||||||||||| ||  ||||||||  ||||||||| |||||||||||||||| |||  ||||||||||||||| ||||| ||||||    
T  19622658 aatttgctatagatcatcgcagcaactggttggtgtgtgtggattcgttaattaccgtgttggtggtcaaatccactccccactctcaagaatctgt 19622562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 30960919 - 30960858
Alignment:
Q  350 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  30960919 ggttggtg-atgtggattcgttaattaccgtgttggcggtcgaatccgctccccactctcaag 30960858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 7647590 - 7647651
Alignment:
Q  350 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||| |||||    
T  7647590 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatgcactccccactctcaag 7647651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 17419161 - 17419091
Alignment:
Q  341 gcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 411  Q
    ||||||||  |||||||| |||||||||  ||||||||||||||||||| |||| ||||| ||||| ||||    
T  17419161 gcagtaaattgttggtgcgtgtggattcgctaattaccgtgttggcggtcgaattcactcgccactctcaa 17419091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 40267894 - 40267805
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| |||||||||  || |||| |||| |||  ||||||||||||||||||||| |||| ||||| |||| |||||    
T  40267894 aatttgatgttgatcatagcagtaaacaattagtgcgtgtgaatttgttaattaccgtgttggcggtttaatctactcctcactctcaag 40267805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 40835122 - 40835033
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  40835122 aatttgatgttgatcatagcagtaaactgttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 40835033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 1594553 - 1594636
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 406  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  1594553 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacact 1594636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 5808339 - 5808428
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  5808339 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 5808428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 16485027 - 16484938
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  16485027 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 16484938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 39004963 - 39004874
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| || |||||| ||| |||| ||||||||  ||||||||||||||| |||||||||| |||||||||| |||||    
T  39004963 aatttgatgttgatcatagctgtaaacagttagtgcgtgtggatttgttaattaccgtgttgacggttgaatctactccccactctcaag 39004874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 39560908 - 39560997
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| | ||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  39560908 aatttgatgttgatcatagcagtaaactgttagtgcgtatggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 39560997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 641016 - 641069
Alignment:
Q  359 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||| |||||    
T  641016 atgtggattcgttaactaccgtgttggcggtcgaatccactccccactctcaag 641069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 16482578 - 16482489
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  16482578 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 16482489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 3335962 - 3336051
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  3335962 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 3336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 25899153 - 25899226
Alignment:
Q  338 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 411  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  25899153 atcgcactaaacggttggtgcatgtggtttcattaattaccgtgttggcggtcgaatctactctccactctcaa 25899226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 33951682 - 33951771
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  33951682 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggattttttaattaccgtgttggcggttgaatctactccccactctcaag 33951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 47330053 - 47330133
Alignment:
Q  332 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  47330053 ttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 47330133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 22402487 - 22402398
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  22402487 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 22402398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 37969257 - 37969168
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  37969257 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 37969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 412
Target Start/End: Original strand, 4062400 - 4062477
Alignment:
Q  335 atcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    ||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  4062400 atcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 4062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 4545679 - 4545776
Alignment:
Q  315 tgggccagaatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||||| | ||| ||||||||||||||||| |||||||   ||| |||||  || ||||| |||||||||| ||||||| |||||||| |||||    
T  4545679 tgggccagaaatggctgttgatcatcgcagtaaatggttggtatgtgttgattcgctatttaccatgttggcggtcgaatccaatccccactctcaag 4545776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 28414066 - 28414155
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||| ||||||||||||||||| ||||| |||| |||||    
T  28414066 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattactgtgttggcggttgaatctactccacactctcaag 28414155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 23687750 - 23687689
Alignment:
Q  338 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 400  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  23687750 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 23687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 24059987 - 24059926
Alignment:
Q  338 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 400  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  24059987 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 24059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 46028310 - 46028379
Alignment:
Q  351 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtct 421  Q
    |||||||| |||| |||| |||||||| ||||||||||| |||||||| ||| | |||||||||| |||||    
T  46028310 gttggtgcttgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtct 46028379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 587374 - 587312
Alignment:
Q  351 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcat 415  Q
    ||||||||| ||||||||| |||||||||||||||| || |||| ||  ||||| ||||||||||    
T  587374 gttggtgcacgtggattcactaattaccgtgttggccgtcgaattca--ccccattttcaagcat 587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 2844037 - 2843948
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  2844037 aatttgatgttgatcatagcagtaaactgttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 2843948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 38981055 - 38981144
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  ||||||| |||||||||||||||||| |||||||||| |||||    
T  38981055 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaacgtgttggcggttgaatctactccccactctcaag 38981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 2027907 - 2027818
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| | ||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  2027907 aatttgatgttgatcatagtagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 2027818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 18414616 - 18414527
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18414616 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 28641572 - 28641661
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  28641572 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 28641661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 32519751 - 32519840
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  32519751 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 32519840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 45541546 - 45541457
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  45541546 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 45541457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 49008252 - 49008163
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||||| |||||||||||||| ||||| |||| |||||    
T  49008252 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtattggcggttgaatctactccacactctcaag 49008163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 8110773 - 8110684
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||   || |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  8110773 aatttgatgttgatcatagcagtaaatatttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 8110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 24779932 - 24779852
Alignment:
Q  332 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||||| | ||||||| ||| |||| | ||||||  |||||||||||||| ||||||||||| |||||||||| |||||    
T  24779932 ttgatcatagaagtaaacagttagtgcgtctggatttgttaattaccgtgttagcggttgaatctactccccactctcaag 24779852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 32829231 - 32829300
Alignment:
Q  351 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtct 421  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||||| |||||||||| |||||    
T  32829231 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtct 32829300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 5965116 - 5965185
Alignment:
Q  351 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtct 421  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||||||| |||||    
T  5965116 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtct 5965185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 15853407 - 15853338
Alignment:
Q  351 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtct 421  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||| | |||||||||| |||||    
T  15853407 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtct 15853338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 36085848 - 36085792
Alignment:
Q  365 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtct 421  Q
    |||| ||| ||||||| ||| |||| |||| |||||| |||||||||||||||||||    
T  36085848 attcgttatttaccgtattgacggtcgaattcactccacactttcaagcatctgtct 36085792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 194654 - 194743
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  194654 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 194743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 4038 - 4127
Alignment:
Q  323 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 412  Q
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T  4038 aatttgatgttgatcatagaaataaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatcttctctccactctcaag 4127  T

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