View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_low_14 (Length: 404)
Name: NF10965_low_14
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 31040138 - 31040521
Alignment:
| Q |
18 |
atgttcactctggaaccccaccattgaaattgaatatcaatttcagttacagcttaacttctttcccctgcatattttttgaacaaataataatcactaa |
117 |
Q |
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| T |
31040138 |
atgttcactctggaaccccaccattgaaattgaatatcaatttcagttacagcttaacttctttcccctgcatattttttgaacaaataataatcactaa |
31040237 |
T |
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| Q |
118 |
acagaatataacagtagtgacagggggagaaaattaagcctctaaacgagcaagtattcattcctgtggctaaatgggaaattaaaataaaatataggtt |
217 |
Q |
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| T |
31040238 |
acagaatataacagtagtgacggggggagaaaattaagcctctaaacgagcaagtattcattcctgtggctaaattggaaattaaaataaaatataggtt |
31040337 |
T |
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| Q |
218 |
ttatattgagcttaaatcattttacaaaccgactcacaaaaataaggtgatgattgttactgggcctgattctctaatattttgttgagtggcccatgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040338 |
ttatattgagcttaaatcattttacaaaccgactcacaaaaataaggtgatgattgttactgggcctgattctctaatattttgttgagtggcccatgta |
31040437 |
T |
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| Q |
318 |
atagcatattagttctttattttattttaatattgaggctaactcatttttattaaaataaaattataaagtttcatctcactc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31040438 |
atagcatattagttctttattttattttaatattgaggctaactcatttttattaaaataaaattataaagtttcatttcactc |
31040521 |
T |
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