View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10965_low_17 (Length: 331)
Name: NF10965_low_17
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 43131611 - 43131336
Alignment:
| Q |
16 |
ctgtgccaattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43131611 |
ctgtgccaattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatact |
43131512 |
T |
|
| Q |
116 |
gcnnnnnnnnnnnnnnnntaacaagttcaataaatatttcctccgtctcattataagtgtctcattttagttgtacgtaattcattcatatatatatgca |
215 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
43131511 |
g-------taaaacaaaataacaagttcaatatatatttcctccgtctcatt--------------ttagttgtacgtaattcattcatatatat--gca |
43131435 |
T |
|
| Q |
216 |
acaaacctggcaagtcgagtatagaacaattgtttggctagtgattggcacttttcaatagtaggtggttcttggacatagtgtttgttcctctccatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43131434 |
acaaacctggcaagtcgagtatagaacaattgtttggccagtgattgacacttttcaatagtaggtggttcttggacatggtgtttgttcctctccatc |
43131336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 33931910 - 33931946
Alignment:
| Q |
155 |
cctccgtctcattataagtgtctcattttagttgtac |
191 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
33931910 |
cctccgtttcattataagtgtctcatttgagttgtac |
33931946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University