View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_low_30 (Length: 228)
Name: NF10965_low_30
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 49223497 - 49223384
Alignment:
| Q |
100 |
ccaccatattttaagaccttattctcattgatattaattgtttttatcaaattgcaattaatttgacatttataatgttcaataatcacagatattttgt |
199 |
Q |
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| T |
49223497 |
ccaccatattttaagaccttgttctcattgatattaattgtttttatcaacttgcaattaatttgacatttataatgttcaataatcacagatattttgt |
49223398 |
T |
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| Q |
200 |
ggctgcattctctg |
213 |
Q |
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|||||||||||||| |
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| T |
49223397 |
ggctgcattctctg |
49223384 |
T |
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