View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10965_low_6 (Length: 516)
Name: NF10965_low_6
Description: NF10965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10965_low_6 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 23279840 - 23279347
Alignment:
| Q |
1 |
aaagcttaaggtgaaattatgatgggtttattttgattttcgtgcgagtttatagggcaagcttcttgttgggaaggattttgcagtagtaagtggccat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23279840 |
aaagcttaaggtgaaattatgatgggtttatttggattttcgtgcgagtttatagggcaagcttcttgttgggaaggattttgcggtagtaagtggccat |
23279741 |
T |
|
| Q |
101 |
ttgtagtgcatgataccaaaaatgaggtgggataggggcatggacaagaagggtgcgtattatattattcatggtgtgaatttttcttttagattttccg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23279740 |
ttttagtgcatgataccaaaaatgaggtgggataggggcatggacaagaagggtgcgtattatattattcatggtgtgaatttttcttttagattttccg |
23279641 |
T |
|
| Q |
201 |
tttaaaggagacgtgtaaggacaataaaatcgaaatgtcattccattgaggtcacaaaatttataaagatatggactgttattaccttgtaatcatttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
23279640 |
tttaaaggagacgtgtaaggacaataaaatcgaaatgtcattccattgaggtcacaaaatttataaagatatgcattgttatcaccttgtaatcatttta |
23279541 |
T |
|
| Q |
301 |
ttcttcattgaaattgtgttttaatatgagcacaaaactgaataaacatggatttcacttgagattgatttgaaattggaaaagtccatataaaatttgt |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23279540 |
tttttcattgaaattgtgttttaatatgagcacaaaactgaataaacatggatttcacttgagatttatttgaaattggaaaagtccatataaaatttgt |
23279441 |
T |
|
| Q |
401 |
gaaatcatcaaggaataaatcataataacaatgtccacctggactaagaataggtgacgtccaaatatcactatgaacaatatgaacatgcatc |
494 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
23279440 |
gaaatcaacaaggaataaatcataataacaatgtccacctggactaagaataggtgacgtccaaatatcactatggacaatatcaacatgcatc |
23279347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 483
Target Start/End: Original strand, 29741501 - 29741607
Alignment:
| Q |
377 |
tggaaaagtccatataaaatttgtgaaatcatcaaggaataaatcataataacaatgtccacctggactaagaataggtgacgtccaaatatcactatga |
476 |
Q |
| |
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|||||||||||| | |||||| ||||||||||| | ||||| |||||||| |||||| |||| |||||||| ||| || ||||||| ||| ||||| |
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| T |
29741501 |
tggaaaagtccacagaaaattcgtgaaatcatctaaaaataatacataataatgatgtcctcctgaactaagaacaggggatgtccaaacatcgctatgc |
29741600 |
T |
|
| Q |
477 |
acaatat |
483 |
Q |
| |
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||||||| |
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| T |
29741601 |
acaatat |
29741607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 483
Target Start/End: Complemental strand, 55156457 - 55156352
Alignment:
| Q |
378 |
ggaaaagtccatataaaatttgtgaaatcatcaaggaataaatcataataacaatgtccacctggactaagaataggtgacgtccaaatatcactatgaa |
477 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || |||||| ||| |||| ||| ||||| | ||||||| | ||||| ||||||| ||||||||| | |
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| T |
55156457 |
ggaaaagtccataaaaaatttgtgaaatcatctagaaataaaatatagtaacgatgaccaccagaactaagagttggtgatgtccaaagatcactatgta |
55156358 |
T |
|
| Q |
478 |
caatat |
483 |
Q |
| |
|
|||||| |
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|
| T |
55156357 |
caatat |
55156352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 89658 - 89552
Alignment:
| Q |
311 |
aaattgtgttttaatatgagcacaaaactgaataaacatggatttcacttgagattgatttgaaattggaaaagtccatataaaatttgtgaaatcatca |
410 |
Q |
| |
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||||||||||||||| ||||||| || || | ||| ||||| | ||||| |||| ||||| |||||||||||||||| |||||| || ||||||||| |
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| T |
89658 |
aaattgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatttgtttgagattggaaaagtccataaaaaattagtaaaatcatca |
89559 |
T |
|
| Q |
411 |
aggaata |
417 |
Q |
| |
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|| |||| |
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|
| T |
89558 |
agaaata |
89552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 483
Target Start/End: Original strand, 32309538 - 32309643
Alignment:
| Q |
378 |
ggaaaagtccatataaaatttgtgaaatcatcaaggaataaatcataataacaatgtccacctggactaagaataggtgacgtccaaatatcactatgaa |
477 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||||||| |||||| ||| || ||| ||||| | ||||||||| ||||| ||||| ||||||||||| | |
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| T |
32309538 |
ggaaaagtccacaaaaaatctgtaaaatcatcaagaaataaaatatagtagtgatgaccaccggaactaagaattggtgatgtccatatatcactatgta |
32309637 |
T |
|
| Q |
478 |
caatat |
483 |
Q |
| |
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|||||| |
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|
| T |
32309638 |
caatat |
32309643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 483
Target Start/End: Complemental strand, 30330122 - 30330017
Alignment:
| Q |
378 |
ggaaaagtccatataaaatttgtgaaatcatcaaggaataaatcataataacaatgtccacctggactaagaataggtgacgtccaaatatcactatgaa |
477 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||| |||||| ||| || | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| | |
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| T |
30330122 |
ggaaaagtccacaaaaaatccgtaaaatcatcaagaaataaaatatagtagcgatgaccaccggaactaagaattggtgatgtccatatatcactatgca |
30330023 |
T |
|
| Q |
478 |
caatat |
483 |
Q |
| |
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|||||| |
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|
| T |
30330022 |
caatat |
30330017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 418
Target Start/End: Original strand, 25626168 - 25626275
Alignment:
| Q |
311 |
aaattgtgttttaatatgagcacaaaactgaataaacatggatttcacttgagattgatttgaaattggaaaagtccatataaaatttgtgaaatcatca |
410 |
Q |
| |
|
||||||||||||||| ||||||| || || | ||| ||||| | ||||| |||| ||||| |||||||||||||| | |||||| || ||||||||| |
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|
| T |
25626168 |
aaattgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatttgtttgagattggaaaagtccacaaaaaattagtaaaatcatca |
25626267 |
T |
|
| Q |
411 |
aggaataa |
418 |
Q |
| |
|
|| ||||| |
|
|
| T |
25626268 |
agaaataa |
25626275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 418
Target Start/End: Original strand, 10535732 - 10535839
Alignment:
| Q |
311 |
aaattgtgttttaatatgagcacaaaactgaataaacatggatttcacttgagattgatttgaaattggaaaagtccatataaaatttgtgaaatcatca |
410 |
Q |
| |
|
||||||||||||||| ||||||| || || | ||| ||||| | ||||| |||| ||||| |||||||||||||| | |||||| || ||||||||| |
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|
| T |
10535732 |
aaattgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatttgtttgagattggaaaagtccacaaaaaattagtaaaatcatca |
10535831 |
T |
|
| Q |
411 |
aggaataa |
418 |
Q |
| |
|
|| ||||| |
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|
| T |
10535832 |
agaaataa |
10535839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 429
Target Start/End: Original strand, 4804009 - 4804127
Alignment:
| Q |
311 |
aaattgtgttttaatatgagcacaaaactgaataaacatggatttcacttgagattgatttgaaattggaaaagtccatataaaatttgtgaaatcatca |
410 |
Q |
| |
|
||||||||||||||| ||||||| || || | ||| ||||| | ||||| |||| | ||| |||||||||||||| | |||||| || ||||||||| |
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|
| T |
4804009 |
aaattgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgattagtatgagattggaaaagtccacaaaaaattagtaaaatcatca |
4804108 |
T |
|
| Q |
411 |
aggaataaatcataataac |
429 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
4804109 |
agaaataacacataataac |
4804127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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