View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10966_high_3 (Length: 334)
Name: NF10966_high_3
Description: NF10966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10966_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 47362506 - 47362203
Alignment:
| Q |
12 |
atgaagcaacgataagagaaaacctttaagacctatcgcgcaaattcgtctcgaatcaaacggatcacgacgaatacacgaaaaatactcgggcgaagca |
111 |
Q |
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| T |
47362506 |
atgaagcaacgataagagaaaacctttaagacctatcgcgcaaattcgtctcgaatcaaacgcatcacgacgaatacacgaaaaatactcgggcgaagca |
47362407 |
T |
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| Q |
112 |
tcgtatttccaaacacaccgtccagtagaaccgttaaacaaagaaagcgtagaaggtccggtaatcgcagcgagtattaacaaatcaggccgcgcctgaa |
211 |
Q |
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| T |
47362406 |
tcgtatttccaaacacaccgtccagtagaaccgttaaacaaagaaagcgtagaaggtccggtaatcgcagcgagtattaacaaatcaggccgcgcctgaa |
47362307 |
T |
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| Q |
212 |
tccaacagagatcctgaatccctaacttcgaatcagtttcaaaccatagaatcgcggatttgagacgaaaatcaagaagagcaatgcgaccttgacgatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47362306 |
tccaacagagatcctgaatccctaacttcgaatcagtttcaaaccatagaatcgcggatttgagacgaaaatcaagaagagcaatgcgaccttgacgatc |
47362207 |
T |
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| Q |
312 |
gccg |
315 |
Q |
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|||| |
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| T |
47362206 |
gccg |
47362203 |
T |
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