View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10966_low_2 (Length: 834)
Name: NF10966_low_2
Description: NF10966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10966_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 47366804 - 47367177
Alignment:
| Q |
1 |
ctaagagtaaagaacttgaagatttagactcagtttttggttcacactgtagagaaatggaggattgtggaagaagacagctaaaatttagacaaattca |
100 |
Q |
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| T |
47366804 |
ctaagagtaaagaacttgaagatttagactcagttttcggttcacgctgtagagaagtggaggattgtggaagaagacagctaaaatttagacaaattca |
47366903 |
T |
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| Q |
101 |
gagacaaaatgaagttgaaagattcgactctccattactatcttcaagaaaatatttacaccataggagcaaaaatttagagggagaagaccattccttt |
200 |
Q |
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| T |
47366904 |
gagacaaaatgaagttgaaagattcgactctccattactatcttcaagaaaatatttacaccataggagcaaaaatttagagggagaagaccattccttt |
47367003 |
T |
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| Q |
201 |
caaagctctcatagaattccaacatacatggttgcaacaaaatcaacacaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaatt |
300 |
Q |
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| T |
47367004 |
caaagatctcacacaattccaacatacatggttgcaacaaaatcaacacaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaatt |
47367103 |
T |
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| Q |
301 |
gggacatgagctctgattgctattcaccaagcaaaagaatgataaataataatcaacaacaaggatctcctagc |
374 |
Q |
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| T |
47367104 |
gggacatgagctctgattgctattcaccaagcaaaagaatgatcaataataatcaacaacaaggatctcctagc |
47367177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 765 - 817
Target Start/End: Original strand, 47367175 - 47367227
Alignment:
| Q |
765 |
agccatatatgtactcgatcttgcatccagtattacaaaaaggaagtacatcc |
817 |
Q |
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| T |
47367175 |
agccatatatgtactcgatcttgcatccagtattacaaaaaggaagtacatcc |
47367227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 39455476 - 39455522
Alignment:
| Q |
260 |
aagatcaacaagcacaccaaaaacaagaataggaaggaattgggaca |
306 |
Q |
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| T |
39455476 |
aagatcaacaggcacacaaaaaataaggataggaaggaattgggaca |
39455522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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