View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10966_low_3 (Length: 602)
Name: NF10966_low_3
Description: NF10966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10966_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 39082340 - 39081755
Alignment:
| Q |
1 |
atcccatcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082340 |
atcccatcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccat |
39082241 |
T |
|
| Q |
101 |
gaattatgatgttggtcttttcttgtattctaatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagagttcatgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39082240 |
gaattatgatgttggtcttttcttgtattctaatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagaattcatgag |
39082141 |
T |
|
| Q |
201 |
aagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattc |
300 |
Q |
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| T |
39082140 |
aagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattc |
39082041 |
T |
|
| Q |
301 |
acagggtcatcacttgagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtctcttgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082040 |
acagggtcatcacttgagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtctcttgc |
39081941 |
T |
|
| Q |
401 |
ggttattttcccaattggggtcacatctccaacaatcatcaattggattgtttgtaccacaagcatcataataacccagttttcttctgttctgattctc |
500 |
Q |
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| T |
39081940 |
ggttgttttcccaattggggtcacatctccaacaatcatcaattggattgtttgtaccacaagcatcataataacccagttttcttctgttctgattctc |
39081841 |
T |
|
| Q |
501 |
aatgatgctcctatatatagaaacaaacaagaagcttatgttgtgctcactattattaacatatttgtttacgtaaacaagggaat |
586 |
Q |
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| T |
39081840 |
aatgatgctcctatatatagaaacaaacaagaagcttatgttgtgctcactattattaacatatttgtttacgtaaacaagggaat |
39081755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 304
Target Start/End: Complemental strand, 39075761 - 39075588
Alignment:
| Q |
131 |
taatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagagttcatgagaagatccatctttagtttgatcaccatgtc |
230 |
Q |
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| T |
39075761 |
taatacaaggtccaccagcaatgtgcacatttgttcctctaccatcaattgttttgaaagaattcatcattagctcttgtttaagcttaataaccatgtc |
39075662 |
T |
|
| Q |
231 |
atgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattcacag |
304 |
Q |
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| T |
39075661 |
acgcttgaagattatccacaatggttcttcttgaataacaccatatcttaatgttcctggctttggattcacag |
39075588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31726977 - 31726939
Alignment:
| Q |
1 |
atcccatcaccatccgatctttctttcctaacacgatgg |
39 |
Q |
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| T |
31726977 |
atcccatcaccatccgatctttctttcctaacacgatgg |
31726939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 34288693 - 34288724
Alignment:
| Q |
166 |
cctctaccatcaattgttttgaaagagttcat |
197 |
Q |
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| T |
34288693 |
cctctaccatcaattgttttgaaagagttcat |
34288724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 43130958 - 43130877
Alignment:
| Q |
365 |
taccgaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcatcaattgg |
446 |
Q |
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| T |
43130958 |
taccgaacccaattgcacaatctgctagcctttgtctgtttttttcccagtttgggtcacatctccaacaatcatcaattgg |
43130877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 446
Target Start/End: Original strand, 7593834 - 7593940
Alignment:
| Q |
340 |
ccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcat |
439 |
Q |
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| T |
7593834 |
ccatttttaccaccaattgcatcttttccaaatccaattgcacaatcagctagtctttgtcggttgttctcccaatttgggtcacatctccaacaatcat |
7593933 |
T |
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| Q |
440 |
caattgg |
446 |
Q |
| |
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||||||| |
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| T |
7593934 |
caattgg |
7593940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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